Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_009996.1 Length=7099 Score E Sequences producing significant alignments: (Bits) Value seq887 147 1e-31 >seq887 Length=1012 Score = 147 bits (162), Expect = 1e-31 Identities = 152/194 (78%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 402 TGACAAGGTGTGAAGAGTCTCGTGTGCTC-CACGTAGAATCCTTCCGGCCCCTGAATGTG 460 ||||| ||||||||||| || || ||| | |||| |||| |||||||||||||| | Sbjct 23 TGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAG--TCCT-CCGGCCCCTGAATGCG 79 Query 461 GCTAATCCTAACCCCGCAGCTATTGCACACAATCCAGTGTGTTGATAGTCGTAATGGGCA 520 |||||||||||| || ||| ||| ||| | |||||| || | ||||||| ||||| Sbjct 80 GCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCA 139 Query 521 ACTGTGGGATGGAACCAACTACTTTGGGTGTCCGTGTTTCCTGTT-TTCTTTAAATACTT 579 ||| || |||||| ||||||||||||||||||||||||| || ||||| | | | Sbjct 140 ACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCT 199 Query 580 GCTTATGGTGACAA 593 |||||||||||||| Sbjct 200 GCTTATGGTGACAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22598843989148