Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_010415.1 Length=7351 Score E Sequences producing significant alignments: (Bits) Value seq887 417 4e-113 >seq887 Length=1012 Score = 417 bits (462), Expect = 4e-113 Identities = 638/906 (70%), Gaps = 55/906 (6%) Strand=Plus/Plus Query 415 GACATGGTGTGAAGAGCCTACTGAGCTAGAGGGTAGTCCTCCGGCCCCTGAATGCGGATA 474 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct 24 GACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAATGCGGCTA 83 Query 475 ATCCTAACCCCGGAGCACCCACACTCAATCCAGAGTGCAGGATGTCGTAACGCGTAAGTC 534 |||||||| |||||||| | | | | |||| | | | |||||||||| | || || Sbjct 84 ATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTC 143 Query 535 TGGGACGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTACTTACTTTGGCTGCTT 594 || ||||||||||||||||||||||||||||||||| || | |||| |||||||||| Sbjct 144 TGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTT 203 Query 595 ATGGTGACAATC-TAGTGTTGTTACCATATAGCTATTGGATTGGCCATCCGGTGT----- 648 |||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 204 ATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGCAAC 263 Query 649 ----------------TTTGAATTG--TGTGT----TTAT-ACT-AATTCTTTTA-CA-T 682 | | |||| | ||| |||| ||| || ||| | | || | Sbjct 264 AGGGCAATTGTTTACCTATTTATTGGTTTTGTACCATTATCACTGAAGTCTGTGATCACT 323 Query 683 ATCA-----------------CAGACAACCAAATATGGGAGCTCAAGTATCAAGACAACA 725 ||| | |||| |||| ||||| | || || || | ||||| Sbjct 324 CTCAAATTCATTTTGACCCTCAACACAATCAAACATGGGCTCACAGGTGTCCACACAACG 383 Query 726 AACTGGCTCACATGAGACAAGTAATATTGCAACCAATGGTAGTACACTACATTATACAAA 785 | || ||||| || | ||| || ||| | ||| || || | ||||| | Sbjct 384 CTCCGGTTCACACGAAAACTCTAACTCAGCTACCGAGGGTTCCACTATAAACTATACTAC 443 Query 786 CATCAACTACTATAATGATTCATATGCGGCTAGTGCAGCAAAACAGGATTTCACTCAAGA 845 ||| || |||||||| ||||| ||||| || | |||| || ||| | | || || Sbjct 444 CATTAATTACTATAAAGATTCCTATGCCGCCACAGCAGGTAAGCAGAGCCTTAAGCAGGA 503 Query 846 TCCCGGCAAGTTCACACAACCTGTCGCAGATGTTTTAAAGCAAACCGCTGTTCCATTAAA 905 || | |||||| || | |||||| ||| | || | ||| || | |||||||| Sbjct 504 CCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACTGAAATGGCAGCGCCATTAAA 563 Query 906 GTCACCCAGTGCTGAAGCTTGCGGTTATAGTGACAGGGTGGCGCAGCTAAAACTGGGCAA 965 || || |||||| || || ||||| ||||| ||||||| || ||| | ||||| Sbjct 564 ATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACTATTGGCAA 623 Query 966 TACCTCCATAACCACTCAAGAAGCTGCAAATATCACTGTAGGATATGGTGAGTGGCCTAC 1025 | | |||| || || |||||||| ||||| |||| || || ||||||||||||||| | Sbjct 624 TTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTC 683 Query 1026 TT--TTCTCAGTAACGTTGATGCCAATGCAGTAGATGCACCAACACACCCCGATGTGTCA 1083 | | || | || |||||||| |||||| || |||||| | ||| ||||| || Sbjct 684 CTACTGTTCGG--ACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGATGTTTCG 741 Query 1084 GTAAATCGCTTTTACACCTTGAAAGCTGTAARGTGGGAGAAAACCTCCACAGGATGGTAT 1143 || ||| | |||||||| ||| | | | ||||||||| | |||| || ||||| Sbjct 742 GTGAATAGGTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAAGGGGTGGTAC 801 Query 1144 TGGAAGTTACCAGACTGT-TTGAATCAACTTGGTGTGTTTGGCCAAAATGCTCAATATCA 1202 ||||| || || || ||| || | | || || || ||||| |||||||| || | || Sbjct 802 TGGAAATTCCCGGA-TGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGCACAGTTCCA 860 Query 1203 CTACCTGTATAGGTCAGGGTTTGCCGTACATGTGCAGTGCAATGCCAGCAAGTTTCACCA 1262 |||||| ||| |||||||||| | | || |||||||||||||| || ||||| ||||| Sbjct 861 CTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGCTAGTAAGTTCCACCA 920 Query 1263 GGGGGC 1268 || || Sbjct 921 AGGAGC 926 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23405145657740