Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_013695.1 Length=7379 Score E Sequences producing significant alignments: (Bits) Value seq887 333 1e-87 >seq887 Length=1012 Score = 333 bits (368), Expect = 1e-87 Identities = 632/913 (69%), Gaps = 38/913 (4%) Strand=Plus/Plus Query 416 GACATGGTGTGAAGAGCCTATTGAGCTAGGTGGTAGTCCTCCGGCCCCTGAATGCGGCTA 475 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 24 GACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAATGCGGCTA 83 Query 476 ATCCTAACTCCGGAGCATATCGGTGCGAACCAGCACTTGGTGTGTTGTAATACGTAAGTC 535 ||||||||| ||||||| || |||||||| |||||||| |||| | || || Sbjct 84 ATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTC 143 Query 536 TGGAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTAACTTTTA-TGGCTGCT 594 || ||||||||||||||||||||||||||||||||||| ||| ||| || |||||||| Sbjct 144 TGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCT-TTTATTCTTATATTGGCTGCT 202 Query 595 TATGGTGACAATTTAACA-TTGTTACCATATAGCTGTTGGGTTGGCCATCCGGATTTTG- 652 |||||||||||| || | |||||||||||||||| |||| |||||||||||| | || Sbjct 203 TATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCATCCGG--TGTGC 260 Query 653 ----------TTATAAAACCATTTCCTCGTGCCTTG-ACCTTTAACAC----ATTTGTGA 697 || | | | |||| | || ||| ||| ||| ||| | ||||| Sbjct 261 AACAGGGCAATTGTTTACCTATTTATTGGT--TTTGTACCATTATCACTGAAGTCTGTGA 318 Query 698 ACTTCTTTAAATCCCTTTTATTAGTCCTTAAATAC---TAAGAATGGGTGCACAAGTATC 754 | | |||| | |||| | || | || || || ||||| |||| || || Sbjct 319 TCACTCTCAAATTCATTTT----GACCCTCAACACAATCAAACATGGGCTCACAGGTGTC 374 Query 755 CACACAAAAATCCGGATCTCATG-AAACTGGCACTTATGCCACAGGTGGATCAACAATTA 813 ||||||| ||||| || || | ||||| ||| | || || | || || || || | Sbjct 375 CACACAACGCTCCGGTTCACACGAAAACTCTAACTCA-GCTACCGAGGGTTCCACTATAA 433 Query 814 ATTACACAAATATAAACTATTACAAAGATAGTTATGCAGCTAGTGCCTCACGGCAAGATT 873 | || || | || || || || |||||| ||||| || | || || ||| Sbjct 434 ACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAGCAGGTAAGC-AGAGC 492 Query 874 TTTCA-CAAGATCCCTCAAAATTCACAAAGCCCGTAGTAGATGCTCTCACCGAAGCTGCT 932 || | || || || || || |||| || || ||| |||| ||| || Sbjct 493 CTTAAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACTGAAATGGCA 552 Query 933 GTTCCTTTGAAATCACCATCAGCAGAAGCTTGCGGTTATAGTGACCGCGTGTTACAATTG 992 | || || ||||| ||||| || || || || ||||| ||||| || ||| |||||| Sbjct 553 GCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTA 612 Query 993 ACACTAGGCAATTCTACTATTACCACACAGGAAGCTGCTAACATTGTGGTGGGTTATGGT 1052 || | ||||||||||| || || || || ||||| || ||||| | || || |||||| Sbjct 613 ACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGT 672 Query 1053 AAATGGCCAGAACATCTGAAGCCAAT-TGATGCTAACTCAATAGATGCCCCAACAAAACC 1111 | ||||| | ||| | | |||||| | || | || ||||| || Sbjct 673 GAGTGGCC-TTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCC 731 Query 1112 AGATGTAGCTGTGAACAGGTTTTACACTCTGAAAGCCAAAAAGTGGGAAAAGGCTTCCAA 1171 |||||| | ||||| ||||||||||| || | | ||| |||||| ||| | ||||| Sbjct 732 AGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAA 791 Query 1172 AGGTTGGATGTGGAAGTTGCCCGATTGTTTGAATGATACCGGAATATTTGGCCAAAATTG 1231 || ||| ||||| || || ||| || | ||| ||||| | ||||| |||||| Sbjct 792 GGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGC 851 Query 1232 CTGGTATCATTTCTTATA-CAGAGGTGGTTGGGCTATACATGTGCAGTGCAATGCTAGCA 1290 || || | | | || | | |||| || || || ||||||||||||||||| | Sbjct 852 ACAGTTCCACTACCTCTATCGGTCAGGGTTCTGC-ATTCACGTGCAGTGCAATGCTAGTA 910 Query 1291 AGTTTCACCAGGG 1303 |||| ||||| || Sbjct 911 AGTTCCACCAAGG 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23494734732028