Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_015934.1 Length=7749 Score E Sequences producing significant alignments: (Bits) Value seq887 113 2e-21 >seq887 Length=1012 Score = 113 bits (124), Expect = 2e-21 Identities = 145/189 (77%), Gaps = 16/189 (8%) Strand=Plus/Plus Query 251 GAAGAGTCTATTGAGCTA-CTGTTGATACCTCCGGCCCCCTGAATGCGGCTAATCTCAAC 309 |||||| ||||||||||| ||| | | ||||||||||| ||||||||||||||| ||| Sbjct 34 GAAGAGCCTATTGAGCTAGCTGGTAGT-CCTCCGGCCCC-TGAATGCGGCTAATCCTAAC 91 Query 310 CCCGGAGCCACTGGGTGGTGAACCAACCACTTGGTGGT----CGTAATGAGCAATTCTGG 365 |||||| || | | || ||||| | |||||| ||||| | |||| |||| Sbjct 92 TGCGGAGC-ACATGCTC----ACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGC 146 Query 366 GACGGAACCGACTACTTTGGGGTGTCCGTGTTT-CTTTTGTTCATAT-TAAACTGTTTTA 423 |||||||||||||||| |||||||||||||| ||||| ||| ||| | ||| ||| Sbjct 147 AGCGGAACCGACTACTTT-GGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTG-CTTA 204 Query 424 TGGTCACAA 432 |||| |||| Sbjct 205 TGGTGACAA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24678590356548