Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_016964.1 Length=7948 Score E Sequences producing significant alignments: (Bits) Value seq887 138 6e-29 >seq887 Length=1012 Score = 138 bits (152), Expect = 6e-29 Identities = 130/162 (80%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 468 GTATTCCTCCGGCCCCTGAATGCGGCTAATCCTAACCCACTTGCACACGCTCGCAACCCA 527 ||| |||||||||||||||||||||||||||||||| ||||| |||| | | ||| Sbjct 56 GTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCA 115 Query 528 GTGAGTGGTGTGTCGTAATGCGCAAGAAGTGGA-CGGAACCGACTACTTTGGGTGTCCGT 586 ||| |||||||||||||| | |||| || | |||||||||||||||||||||||||| Sbjct 116 GTGGGTGGTGTGTCGTAACGGGCAA-CTCTGCAGCGGAACCGACTACTTTGGGTGTCCGT 174 Query 587 GTTTCtttttttATTTACCAAGTCT-CTTATGGTCACAAGCA 627 ||||| |||| | ||| | || |||||||| |||| || Sbjct 175 GTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCA 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25315312705952