Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_024073.1 Length=7376 Score E Sequences producing significant alignments: (Bits) Value seq887 394 4e-106 >seq887 Length=1012 Score = 394 bits (436), Expect = 4e-106 Identities = 672/955 (70%), Gaps = 41/955 (4%) Strand=Plus/Plus Query 406 ATACTGACATGGTGTGAAGAGCCTATTGAGCTACGTGGTAGTCCTCCGGCCCCTGAATGC 465 || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 19 ATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAATGC 78 Query 466 GGCTAATCCTAACTCCGGAGCATCCGC-CAGTAAGCCCACTGGAAGG-GTGTCGTAATGC 523 |||||||||||||| ||||||| || || || ||| ||| || ||||||||| | Sbjct 79 GGCTAATCCTAACTGCGGAGCACATGCTCACGAA--CCAGTGGGTGGTGTGTCGTAACGG 136 Query 524 GAAAGTCTGGAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTACTTATTGTT 583 | || |||| ||||||||||||||||||||||||||||||||||| || | ||||| | Sbjct 137 GCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTAT--AT 194 Query 584 TGGCTGCTTATGGTGACAA-CTTATAGTTATCATCATA-AGCTACTTGGTCTTGCCAACC 641 ||||||||||||||||||| | | |||| | | |||| ||||| |||| | |||| || Sbjct 195 TGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTA-TTGGATTGGCCATCC 253 Query 642 GGAG-----------AATTATTTGGTTATTTGTTGGTTT-----CATAAAC-CTACAGTC 684 || | |||| ||| ||||| ||||||| ||| | | || |||| Sbjct 254 GGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGTACCATTATCACTGAAGTC 313 Query 685 GTATTTTC-CTGTCTTATTAATTGT---TCTCAAAATTAACAACAATGGGAGCACAAGTG 740 | | || || || ||| ||| | ||||| | | ||| ||||| |||| ||| Sbjct 314 -TGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACATGGGCTCACAGGTG 372 Query 741 TCAAGGCAAGAGTCGGGGAACCACCAAGCAACATCCATC---GCAAGTGGTGGTAGTACC 797 || | ||| || || ||| || ||| || | | || | | ||| || Sbjct 373 TCCACACAACGCTCCGGTTCACACGAA--AAC-TCTAACTCAGCTACCGAGGGTTCCACT 429 Query 798 ATACACTACACAAACATCAATTATTATAAGGATAGTTATGCTGCAGCTGCTAATAAACA- 856 ||| |||| || | ||| ||||| ||||| ||| ||||| || | || ||| || Sbjct 430 ATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAGCAGGTAAGCAG 489 Query 857 AGATTTCAGCCAGGACCCATCGAAGTTTACACAACCAGTGGTAGATGTATTAAAGGAAAC 916 || || || ||||||||| |||||| || | || || ||| | || | |||| Sbjct 490 AGCCTTAAG-CAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACTGAAAT 548 Query 917 TGCCGTGCCCTTAAAGTCACCATCGGCAGAAGCATGTGGGTATAGTGACAGAGTTGCCCA 976 || | ||| ||||| || ||||| || || |||||||| || ||||| | || || || Sbjct 549 GGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACA 608 Query 977 GTTGACCATCGGCAATTCAACTATCACTACACAGGAAGCAGCTAACATTGTAGTAGGGTA 1036 || || || |||||||| || |||||||| || |||||||| ||||| |||| || || Sbjct 609 ATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTA 668 Query 1037 TGGTGAATGGCCAGAGTATTTGAGGGATGATGAGGCCACTGCTGTGGATAAACCAACCAA 1096 |||||| ||||| || | ||| ||| |||||||| ||||| |||||||| Sbjct 669 TGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCG 728 Query 1097 ACCAGATGTTTCTGCCAATCGCTTTTACACATTGCCCTCTAAGAAGTGGGA-AACCAATT 1155 ||||||||||| | ||| | |||||||||||| | | || |||||| || || Sbjct 729 CCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATC 788 Query 1156 CAACAGGGTGGTATTGGAAATTACCCGACGCCCTGTGTGAATTAGGAATGTTTGGGCAGA 1215 ||| |||||||| |||||||| || || | | |||| || | ||||| || | Sbjct 789 CAA-GGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAA 847 Query 1216 ATGCTGTGTACCATTTCCTTTACCGGAGCGGCTGGTTGATACATGTACAGGCTAATGCTA 1275 |||| || ||| | ||| || ||| || | | || || || ||| ||||||| Sbjct 848 ATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGCTA 907 Query 1276 GTAAATTCCACCAAGGCACCTTGTTAGTTCTTGCTATCCCTGAGTTTGTGATTGG 1330 |||| ||||||||||| | | |||| || |||| |||| ||| ||||| Sbjct 908 GTAAGTTCCACCAAGGAGCACTCCTAGTCGCTGTCCTCCCAGAGTATGTCATTGG 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23485135902640