Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_029854.1 Length=7382 Score E Sequences producing significant alignments: (Bits) Value seq887 98.7 5e-17 >seq887 Length=1012 Score = 98.7 bits (108), Expect = 5e-17 Identities = 145/200 (73%), Gaps = 18/200 (9%) Strand=Plus/Plus Query 495 AAGAGCCGATTGTGCTGGAGTGGTCTTCCTCCGGGGCCGTGAATGCTGCTAATCCTAACC 554 ||||||| |||| ||| | |||| |||||||| || ||||||| |||||||||||| Sbjct 35 AAGAGCCTATTGAGCTAGC-TGGTAGTCCTCCGGCCCC-TGAATGCGGCTAATCCTAACT 92 Query 555 TCCGAGCGTGTGCGCACAATCCAGT-GTTGCTACGTCGTAACGCGTAAGTTGGAGGCGGA 613 | |||| ||| ||| | ||||| | || | ||||||||| | || | | ||||| Sbjct 93 GCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGA 152 Query 614 ACAGACTACTTTCGGCACCCCGTGTTTCCTTTATTTTATTCTTAT--------TTTATGG 665 || ||||||||| || |||||||||| |||||||||||| |||||| Sbjct 153 ACCGACTACTTT-GGGTGTCCGTGTTTCC----TTTTATTCTTATATTGGCTGCTTATGG 207 Query 666 TGACAATTGCAGAGATTTGT 685 ||||||| || ||| |||| Sbjct 208 TGACAAT--CAAAGAGTTGT 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23504333561416