Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_029905.1 Length=7367 Score E Sequences producing significant alignments: (Bits) Value seq887 140 2e-29 >seq887 Length=1012 Score = 140 bits (154), Expect = 2e-29 Identities = 177/240 (74%), Gaps = 19/240 (8%) Strand=Plus/Plus Query 428 GACAGGGTGTGAAGGCGCTATTGCGCTACTAAGGAGTCCTCCGGCCCCTGAATGCGGCTA 487 |||| ||||||||| |||||| |||| | |||||||||||||||||||||||||| Sbjct 24 GACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAATGCGGCTA 83 Query 488 ACCCGAACCCCG-AGCCCACGGTGGTAAACCCGCCACAAGTGGGTCGTAATGAGTAATT- 545 | || ||| || ||| || | | |||| | ||| ||||||| | | || | Sbjct 84 ATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTC 143 Query 546 TGGGGCAGGGACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCCATACGATGGCTGC 605 || || || ||||||||||||||||||||||||||||| || ||| || ||||||| Sbjct 144 TGCAGC-GGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCT-TATATTGGCTGC 201 Query 606 TTATGGTGACAA--------------CCATA-AGCAATTGGATTGGCCATCCGGTGTTCA 650 |||||||||||| ||||| ||| ||||||||||||||||||||| || Sbjct 202 TTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGCA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23456339414476