Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_030454.1 Length=7317 Score E Sequences producing significant alignments: (Bits) Value seq887 594 2e-166 seq925 230 1e-56 >seq887 Length=1012 Score = 594 bits (658), Expect = 2e-166 Identities = 704/944 (75%), Gaps = 14/944 (1%) Strand=Plus/Plus Query 393 AACCCATAGGACGCTCTAAGGTGGACATGGTGTGAAGAGTCTATTGAGCTAGTTAGTAGT 452 || |||| ||||||||||| |||||||||||||||| |||||||||||| | ||||| Sbjct 1 AATCCATGGGACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGT 60 Query 453 CCTCCGGCCCCTGAATGCGGCTAATCCTAACTGTGGAGCGCATACTCCCAAACCAGGGAG 512 ||||||||||||||||||||||||||||||||| ||||| ||| ||| | |||||| | | Sbjct 61 CCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGG 120 Query 513 CAGTGCGTCGTAACGGGCAACTCCGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCC 572 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 TGGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCC 180 Query 573 TTTTATTCCTATACTGGCTGCTTATGGTGACAAT-TGAGAGATTGTTACCATATAGCTAT 631 |||||||| |||| |||||||||||||||||||| |||| |||||||||||||||||| Sbjct 181 TTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAG-TTGTTACCATATAGCTAT 239 Query 632 TGGATTGGCCATCCAGTGTGTAATAGAGCAATCATTTACCAATTTGTTGGATTTACTCCA 691 |||||||||||||| ||||| || || ||||| |||||| |||| |||| ||| ||| Sbjct 240 TGGATTGGCCATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGTACCA 299 Query 692 TTAACCCACACGTCTCTCAACACACTACATTTCATCTTACTACTGAACAC--TAGAAAAT 749 ||| | | | |||| | | ||| || | ||||| || || ||||| | || || Sbjct 300 TTATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACAT 359 Query 750 GGGAGCACAAGTGTCAACACAGCGAACCGGGTCACACGAGACCAGCAACGTTGTCAAAGA 809 ||| |||| ||||| ||||| || |||| |||||||| | | ||| | | || Sbjct 360 GGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAACTCTAACTCAGCTACCGA 419 Query 810 TGGGTCTACATTAAATTTCACAAACATCAACTTTTACCGCGACTCATACGCGGCTGCAGC 869 || || || |||| | || | ||| || | || || || || || || |||| Sbjct 420 GGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAGC 479 Query 870 ATCAAAACA-AGATTTAAGCATGGACCCGAGCAAGTTCACGCAACCACTGCTTGATG--- 925 | || || || ||||||| |||||| |||||| |||| ||| | | | Sbjct 480 AGGTAAGCAGAGCCTTAAGCA-GGACCCAGACAAGTT--TGCAAATCCTG-TCAAAGACA 535 Query 926 -CTATACGAGAGACAGCTGCCCCTCTACAATCACCATCTGCAGAAGCTTGTGGCTATAGT 984 || || || | || || || || |||| |||||||| || || ||||| || ||| Sbjct 536 TCTTCAC-TGAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGT 594 Query 985 GATAGAGTTGCCCAACTGACTGTTGGTAATTCCACCATAACCACACAGGAGGCAGCAAAC 1044 ||| | || || ||| | ||| |||| ||||| ||||| || || || || ||||||||| Sbjct 595 GATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAAC 654 Query 1045 ATAGTTGTGAGCTATGGTGAATGGCCAGAGTACTGCCCAGACACAGACGCCACGGCAGTA 1104 || | || |||||||||| ||||| ||||| | ||| | || ||||| ||||| Sbjct 655 ATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTG 714 Query 1105 GATAAGCCAACGAGGCCTGATGTGTCGGTCAACAGGTTTTATACGTTGCCAGCTAGACTA 1164 || || |||||| | || ||||| ||||| || |||||||| || ||| | | | | Sbjct 715 GACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTG 774 Query 1165 TGGGAAAAGGCATCAACTGGATGGTACTGGAAGTTTCCTGATGTTCTTACTCAGACGGGT 1224 ||||| ||| |||| | || ||||||||||| || || ||||| | ||| | || || Sbjct 775 TGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGG 834 Query 1225 GTGTTTGGACAGAACGCTCAGTTCCATTTCTTGTATAGGTCCGGGTTTTGTATTCATGTC 1284 || ||||| || || || |||||||| | | | ||| |||| ||||| || ||||| || Sbjct 835 GTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTG 894 Query 1285 CAATGCAACGCCAGTAAATTCCATCAAGGTRCATTACTGGTAGC 1328 || ||||| || ||||| ||||| ||||| || | || || || Sbjct 895 CAGTGCAATGCTAGTAAGTTCCACCAAGGAGCACTCCTAGTCGC 938 >seq925 Length=970 Score = 230 bits (254), Expect = 1e-56 Identities = 642/977 (66%), Gaps = 31/977 (3%) Strand=Plus/Minus Query 2548 ACTGGTAGTGTGCCAGCGCTCCAGGCTGCCGAGACAGGAGCATCCTCAACCGCTACGGAT 2607 ||||||| || ||||| ||||| || || || | |||||||| |||| |||| ||| Sbjct 963 ACTGGTAAAGTTCCAGCACTCCAAGCCGCTGAAATTGGAGCATCATCAAATGCTAGTGAT 904 Query 2608 GAAAGGATGATTGAGACCAGGTGTGTGGTAAACAGGAACGGAACAACTGAAGCGACTATT 2667 || || ||||||||||| ||||||| | || | | ||| |||| | ||| || Sbjct 903 GAGAGTATGATTGAGACACGGTGTGTTCTTAATTCACATAGCACAGCTGAGACCACTCTT 844 Query 2668 GAGCACTTTTTCTCTCGAGCTGCCCTCGTTGGAAAGGTCCACAT------TAATGACACA 2721 || ||| ||| |||| | | |||||| || | || | | | | |||| Sbjct 843 GATAGCTTCTTCAGCAGAGCAGGATTAGTTGGAGAGATAGACCTCCCTCTTGAAGGCACA 784 Query 2722 GGGACCACTGGCAAAGGGTTTGACCTGTGGGATATAGATGTCATGGGGTATGTGCAACTT 2781 |||| || |||| | ||||| ||||| | | || || | |||| | Sbjct 783 ---ACCAACCCGAATGGGTACGCAAACTGGGACATAGACATAACAGGTTACGCGCAAATG 727 Query 2782 AGACGCAAGTTAGAACTGTTCACATACATGAGATTCAACGCAGAGTTTACATTTGT---- 2837 | | ||| | || |||||||| |||||| | || |||||||||| || ||||| Sbjct 726 CGTAGAAAGGTGGAGCTGTTCACCTACATGCGTTTTGACGCAGAGTTCACCTTTGTTGCA 667 Query 2838 --CACCACTACTCATGAAGGGAAGACACCTGAGTGTATGTTACAGTTCATGTACATCCCA 2895 |||| |||| |||| | | || | | || | || | ||||| | ||| Sbjct 666 TGCACCCCTACCGGGGAAGTT--GTC-CCGCAAT---TGCTCCAATACATGTTTGTACCA 613 Query 2896 CCTGGAGCACCACACCCAGACACTAGGGATGCTTTCCAGTGGCAAACCTCAACCAATCCC 2955 || ||||| || | |||||| | || || || || |||||||| | ||||||||| Sbjct 612 CCCGGAGCCCCCAAGCCAGACTCCAGAGAATCTCTCGCATGGCAAACTGCCACCAATCCC 553 Query 2956 TCCGTGTTTGCAAAAATGAGTGATCCTCCAGCCCAAGTCTCTGTCCCTTTCATGTCGCCT 3015 || || |||| || || || || ||||| ||||| ||||| || |||||||| ||| Sbjct 552 TCAGTTTTTGTGAAGCTGTCAGACCCCCCAGCACAAGTTTCTGTTCCATTCATGTCACCT 493 Query 3016 GCTAGTGCTTACCAATGGTTTTATGATGGATATCCCACCTTTGGTGACCATAGTGGGGAC 3075 || || || || |||||||||||||| || |||||||| || ||||| || | ||| Sbjct 492 GCGAGCGCCTATCAATGGTTTTATGACGGGTATCCCACATTCGGTGAACACAAACAGGAG 433 Query 3076 GACTCACTAAGGTATGGACAGTGTCCAAATAACATGTTGGGAACCTTCGCCATTCGA--- 3132 | || || || || ||||| |||||| |||| || ||| | | || Sbjct 432 AAAGACCTTGAATACGGGGCATGCCCAAACAACATGATGGGTACGTTCTCAGTGCGGACT 373 Query 3133 GTGGTCAGTGAGAACGTGTCCGGTTACAATTTCACCACTAGGGTATACATGAAATTAAAG 3192 || | || ||| |||| ||| || | ||| | ||||||| | ||| Sbjct 372 GTAGGCACCTCGAA---GTCCAAGTACCCATTGGTGATCAGGATTTACATGAGGATGAAG 316 Query 3193 CATATTAGAGCCTGGGTCCCTAGGCCTTTACGCTCTCAG--CCATACATCCTAAAGAACT 3250 || | || || ||| | ||| | || | || ||| | || || | |||| | Sbjct 315 CACGTCAGGGCGTGGATACCTCGCCCAATGCGTAACCAGAACTATCTATTC-AAAGC-CA 258 Query 3251 ACCCAAATTATGACGGACAGAACATACACCCAGCATCTCATAACCGGTCAACTATTACTA 3310 |||||||||||| || | || | ||| | | | || || | || || | Sbjct 257 ACCCAAATTATGCTGGTAATTCTATTAAACCAACTGGTGCCAGTCGCACAGCAATCACCA 198 Query 3311 CAACTGGGAAATTTGGACAACAATCCGGGGCTATTTACGTGAGTAACTATAGGGTGGTGA 3370 | |||||||||||||| || ||||| ||||| |||||| | |||| ||| ||||| | Sbjct 197 CCCTCGGGAAATTTGGACAGCAGTCCGGAGCTATCTACGTGGGCAACTTTAGAGTGGTTA 138 Query 3371 ATCGTCACCTCGCCACCCACAATGATTGGGCCAATCTTGTGTGGGAAGACAGTACAAGAG 3430 | || || || || || || ||||| ||||| || ||||| ||||||||||| | | | Sbjct 137 ACCGCCATCTTGCTACTCATAATGACTGGGCAAACCTTGTTTGGGAAGACAGCTCCCGCG 78 Query 3431 ACCTTCTCGTGTCTTCTACTACTGCGCAGGGATGTGACACCATTGCCCGCTGTAGCTGTC 3490 || | ||||| || ||||| ||||| || || |||||||| ||||| || || | || | Sbjct 77 ACTTGCTCGTATCATCTACCACTGCTCAAGGCTGTGACACGATTGCTCGTTGCAATTGCC 18 Query 3491 AAACTGGAGTGTACTAT 3507 | || |||||||| ||| Sbjct 17 AGACAGGAGTGTATTAT 1 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23296358924676