Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_031259.1 Length=9924 Score E Sequences producing significant alignments: (Bits) Value seq90 91.5 9e-15 seq6 78.8 6e-11 >seq90 Length=315787 Score = 91.5 bits (100), Expect = 9e-15 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 4389 AGAAAGGTCCCAAAGGAATGGAAGATCGTAAGTCTTCATTCTAAAGAAAGAGAGTTAAAA 4448 ||||| || ||| | || ||||| |||| || | ||||| |||||| ||||||| || Sbjct 202180 AGAAAAGTTCCAGACGACTGGAAACTCGTGGGTGTACATTCAAAAGAACGAGAGTTGAAG 202239 Query 4449 ATAGAAGCTAGATTATTTGCCATGATGGTATTAGAAATGAGAATGTATTTTGCAACAACT 4508 || | | | | | |||||||||||| ||||||||| |||| |||||| | ||| Sbjct 202240 ATCGCACCGCGGCTTTTTGCCATGATGCCGTTAGAAATGCGAATTTATTTTTGTATCACT 202299 Query 4509 GAAAAGAATATATCTGATATTTTATTTAAATATGTTCCAAATCAGACCATGAC 4561 |||| |||||| | | | | ||||||||| | ||| | || || ||||| Sbjct 202300 GAAATGAATATTGCGTCCACTGTGTTTAAATATTTCCCACAGCAAACGATGAC 202352 >seq6 Length=1049716 Score = 78.8 bits (86), Expect = 6e-11 Identities = 126/179 (70%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 4386 GAAAGAAAGGTCCCAAAGGAATGGAAGATCGTAAGTCTTCATTCTAAAGAAAGAGAGTTA 4445 |||||| |||| || | ||||| | | ||| | ||||||||||||||||||| || Sbjct 488636 GAAAGACAGGTTCCTGATGAATGTTAAGTTGTAGGAGTTCATTCTAAAGAAAGAGAATTG 488577 Query 4446 AAAATAGAAGCTAGATTATTTGCCATGATGGTATTAGAAATGAGAATGTATTTTGCAAC- 4504 || || | | ||||||||||| |||||| || || ||| || ||||||| || | Sbjct 488576 AAGATTGCTCCAAGATTATTTGCAATGATGACTTTGGAGATGCGACTGTATTT--CAGCT 488519 Query 4505 AACTGAAAAGAATATATCTGATATTTTATTTAAATATGTTCCAAATCAGACCATGACAA 4563 || || | |||||| | | | | || |||||| | ||| | || || ||||||| Sbjct 488518 TACGGAGATGAATATTGCAAAGACAATCTTCAAATATTTCCCACAACAAACAATGACAA 488460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31641000905856