Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_002016.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value seq192717 1324 0.0 >seq192717 Length=982 Score = 1324 bits (1468), Expect = 0.0 Identities = 883/982 (90%), Gaps = 0/982 (0%) Strand=Plus/Minus Query 22 AAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATCCCGTCAGGCCC 81 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 982 AAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCGTCAGGCCC 923 Query 82 CCTCAAAGCCGAGATCGCACAGAGACTTGAAGATGTCTTTGCAGGGAAGAACACCGATCT 141 |||||||||||||||||| |||||||| ||| |||||||||||| |||||||| ||||| Sbjct 922 CCTCAAAGCCGAGATCGCGCAGAGACTGGAAAGTGTCTTTGCAGGAAAGAACACAGATCT 863 Query 142 TGAGGTTCTCATGGAATGGCTAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGAT 201 ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 862 TGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAAT 803 Query 202 TTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTT 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 TTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTT 743 Query 262 TGTCCAAAATGCCCTTAATGGGAACGGGGATCCAAATAACATGGACAAAGCAGTTAAACT 321 ||||||||||||||| |||||||| ||||| || || |||||||| | |||||||||||| Sbjct 742 TGTCCAAAATGCCCTAAATGGGAATGGGGACCCGAACAACATGGATAGAGCAGTTAAACT 683 Query 322 GTATAGGAAGCTCAAGAGGGAGATAACATTCCATGGGGCCAAAGAAATCTCACTCAGTTA 381 || | ||||||||| || || ||||| |||||||||||||| || | ||||| || || Sbjct 682 ATACAAGAAGCTCAAAAGAGAAATAACGTTCCATGGGGCCAAGGAGGTGTCACTAAGCTA 623 Query 382 TTCTGCTGGTGCACTTGCCAGTTGTATGGGCCTCATATACAACAGGATGGGGGCTGTGAC 441 ||| ||||||||||||||||||| |||||||||||||||||||||||||| | ||||| Sbjct 622 TTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGGATGGGAACAGTGAC 563 Query 442 CACTGAAGTGGCATTTGGCCTGGTATGTGCAACCTGTGAACAGATTGCTGACTCCCAGCA 501 ||| |||| || ||||| || || ||||| || ||||||||||||||||| || ||||| Sbjct 562 CACAGAAGCTGCTTTTGGTCTAGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCA 503 Query 502 TCGGTCTCATAGGCAAATGGTGACAACAACCAACCCACTAATCAGACATGAGAACAGAAT 561 ||||||||| || ||||||| || || ||||| ||||||||||| ||||| |||||||| Sbjct 502 TCGGTCTCACAGACAAATGGCTACTACCACCAATCCACTAATCAGGCATGAAAACAGAAT 443 Query 562 GGTTTTAGCCAGCACTACAGCTAAGGCTATGGAGCAAATGGCTGGATCGAGTGAGCAAGC 621 ||| | || |||||||| || ||||||||||| || ||||||||||||||||| || || Sbjct 442 GGTGCTGGCTAGCACTACGGCAAAGGCTATGGAACAGATGGCTGGATCGAGTGAACAGGC 383 Query 622 AGCAGAGGCCATGGAGGTTGCTAGTCAGGCTAGGCAAATGGTGCAAGCGATGAGAACCAT 681 ||||||||||||||||||||||| |||| ||||||| ||||| || || |||||||| || Sbjct 382 AGCAGAGGCCATGGAGGTTGCTAATCAGACTAGGCAGATGGTACATGCAATGAGAACTAT 323 Query 682 TGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAAATGATCTTCTTGAAAATTTGCAGGC 741 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 322 TGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAGGC 263 Query 742 CTATCAGAAACGAATGGGGGTGCAGATGCAACGGTTCAAGTGATCCTCTCGCTATTGCCG 801 ||| ||||| |||||||| ||||||||||| || ||||||||||||||||| ||||| | Sbjct 262 CTACCAGAAGCGAATGGGAGTGCAGATGCAGCGATTCAAGTGATCCTCTCGTCATTGCAG 203 Query 802 CAAATATCATTGGGATCTTGCACTTGATATTGTGGATTCTTGATCGTCtttttttCAAAT 861 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 202 CAAATATCATTGGGATCTTGCACCTGATATTGTGGATTACTGATCGTCTTTTTTTCAAAT 143 Query 862 GCATTTACCGTCGCTTTAAATACGGACTGAAAGGAGGGCCTTCTACGGAAGGAGTGCCAA 921 | ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 142 GTATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTG 83 Query 922 AGTCTATGAGGGAAGAATATCGAAAGGAACAGCAGAGTGCTGTGGATGCTGACGATGGTC 981 |||| |||||||||||||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 82 AGTCCATGAGGGAAGAATATCAACAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTC 23 Query 982 ATTTTGTCAGCATAGAGCTGGA 1003 ||||||||| ||||||||| || Sbjct 22 ATTTTGTCAACATAGAGCTAGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3170421512804