Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09- 26] 316,398 sequences; 617,344,661 total letters Query= NC_007367.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value seq192717 1162 0.0 >seq192717 Length=982 Score = 1162 bits (1288), Expect = 0.0 Identities = 844/977 (86%), Gaps = 0/977 (0%) Strand=Plus/Minus Query 22 AAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCTCTCTATCGTTCCATCAGGCCC 81 ||||||||| ||||||||||||||||||||||| ||||| |||||| | || |||||||| Sbjct 982 AAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCGTCAGGCCC 923 Query 82 CCTCAAAGCCGAGATCGCGCAGAGACTTGAAGATGTCTTTGCTGGGAAAAACACAGATCT 141 ||||||||||||||||||||||||||| ||| ||||||||| || || ||||||||||| Sbjct 922 CCTCAAAGCCGAGATCGCGCAGAGACTGGAAAGTGTCTTTGCAGGAAAGAACACAGATCT 863 Query 142 TGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATTCTGTCACCTCTGACTAAGGGGAT 201 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 862 TGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAAT 803 Query 202 TTTGGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTT 261 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 TTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTT 743 Query 262 TGTCCAAAATGCCCTCAATGGGAATGGAGATCCAAATAACATGGACAAAGCAGTTAAACT 321 ||||||||||||||| ||||||||||| || || || |||||||| | |||||||||||| Sbjct 742 TGTCCAAAATGCCCTAAATGGGAATGGGGACCCGAACAACATGGATAGAGCAGTTAAACT 683 Query 322 GTATAGGAAACTTAAGAGGGAGATAACGTTCCATGGGGCCAAAGAAATAGCTCTCAGTTA 381 || | ||| || || || || |||||||||||||||||||| || | | || || || Sbjct 682 ATACAAGAAGCTCAAAAGAGAAATAACGTTCCATGGGGCCAAGGAGGTGTCACTAAGCTA 623 Query 382 TTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAATAGGATGGGGGCTGTAAC 441 ||| ||||||||||||||||||||||||||||||||||||| |||||||| | || || Sbjct 622 TTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGGATGGGAACAGTGAC 563 Query 442 CACTGAAGTGGCATTTGGCCTGGTATGTGCAACATGTGAACAGATTGCTGACTCCCAGCA 501 ||| |||| || ||||| || || ||||| || ||||||||||||||||| || ||||| Sbjct 562 CACAGAAGCTGCTTTTGGTCTAGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCA 503 Query 502 CAGGTCTCATAGGCAAATGGTGGCAACAACCAATCCATTAATAAAACATGAGAACAGAAT 561 ||||||| || ||||||| | || ||||||||| |||| | ||||| |||||||| Sbjct 502 TCGGTCTCACAGACAAATGGCTACTACCACCAATCCACTAATCAGGCATGAAAACAGAAT 443 Query 562 GGTTTTGGCCAGCACTACAGCTAAGGCTATGGAGCAAATGGCTGGATCAAGTGAGCAGGC 621 ||| |||| |||||||| || ||||||||||| || ||||||||||| ||||| ||||| Sbjct 442 GGTGCTGGCTAGCACTACGGCAAAGGCTATGGAACAGATGGCTGGATCGAGTGAACAGGC 383 Query 622 AGCGGAGGCCATGGAAATTGCTAGTCAGGCCAGGCAAATGGTGCAGGCAATGAGAGCCGT 681 ||| ||||||||||| |||||| |||| | ||||| ||||| || ||||||||| | | Sbjct 382 AGCAGAGGCCATGGAGGTTGCTAATCAGACTAGGCAGATGGTACATGCAATGAGAACTAT 323 Query 682 TGGGACTCATCCTAGCTCCAGTACTGGTCTAAGAGATGATCTTCTTGAAAATTTGCAGAC 741 |||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||| | Sbjct 322 TGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAGGC 263 Query 742 CTATCAGAAACGAATGGGGGTGCAGATGCAACGATTCAAGTGACCCGCTTGTTGTTGCCG 801 ||| ||||| |||||||| ||||||||||| |||||||||||| || || || |||| | Sbjct 262 CTACCAGAAGCGAATGGGAGTGCAGATGCAGCGATTCAAGTGATCCTCTCGTCATTGCAG 203 Query 802 CGAGTATCATTGGGATCTTGCACTTGATATTGTGGATTCTTGATCGTCtttttttCAAAT 861 | | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 202 CAAATATCATTGGGATCTTGCACCTGATATTGTGGATTACTGATCGTCTTTTTTTCAAAT 143 Query 862 GCGTCTATCGACTCTTCAAACACGGCCTTAAAAGAGGCCCTTCTACGGAAGGAGTACCTG 921 | | ||||| | ||| ||| |||| | |||||||| ||||||||||||||||| |||| Sbjct 142 GTATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTG 83 Query 922 AGTCTATGAGGGAAGAATATCGAAAGGAACAGCAGAATGCTGTGGATGCTGACGACAGTC 981 |||| |||||||||||||||| | |||||||||||| ||||||||||| |||||| ||| Sbjct 82 AGTCCATGAGGGAAGAATATCAACAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTC 23 Query 982 ATTTTGTCAGCATAGAG 998 ||||||||| ||||||| Sbjct 22 ATTTTGTCAACATAGAG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3170421512804