Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_001361.2 Length=8533 Score E Sequences producing significant alignments: (Bits) Value seq74459 293 1e-75 >seq74459 Length=1629 Score = 293 bits (324), Expect = 1e-75 Identities = 756/1139 (66%), Gaps = 47/1139 (4%) Strand=Plus/Plus Query 5001 ACTTCGAAGAGAAGAAGCTGAGCAAAAGTGCTGCCACAATTGAGAATCACTCTGGACGCT 5060 |||||||||| |||||| ||||||||||||| |||||| || || |||| || | Sbjct 4 ACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGTT 63 Query 5061 CATGCCGGGATTGGCCTACAGATGTGGCCCAGATTTTCTCAAAAAGTCAGTTGTGCACCA 5120 || | || ||||| | ||| | | | ||||| ||| || |||||||| | Sbjct 64 CAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACGA 123 Query 5121 AATTCGACAATAGGTTCAGGGTTGCTAAAGCAGCGCAGAGCATCGTGTGTTTTCAACATG 5180 |||| || ||| | || |||| |||||| || || || || ||||| ||| || | Sbjct 124 AATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCACG 183 Query 5181 CGGTCTTGTGTCGTTTTGCGCCCTACATGCGATACATTGAGATGAAAGTGCACGAGGTGC 5240 | || | || | || || || ||||| | || || ||| || || |||| | Sbjct 184 CCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCGT 243 Query 5241 TGCCGAAGAATTACTACATCCACTCAGGAAAGGGTTTGGAGGAGCTGGATGCGTGGGTCA 5300 |||| |||| | ||||||||| || ||||| ||||||||||| ||| ||||||| Sbjct 244 TGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTCC 303 Query 5301 AGAAAGGGAAGTTTGACCGGATTTGCACGGAGTCTGATTATGAGGCATTCGATGCGTCAC 5360 || || || | | |||||||||| || || ||||| ||||| ||||| |||| Sbjct 304 TTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCAC 363 Query 5361 AAGATGAATTTATCATGGCTTTCGAGCTGGAATTGATGAAGTACTTAAGGTTACCAAGTG 5420 | ||| ||| ||||||||||| || | | ||||| |||| | || | ||||| | Sbjct 364 AGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGGG 423 Query 5421 ATCTAATCGAGGATTACAAGTTCATCAAGACTAGCCTAGGATCTAAATTGGGCAATTTTG 5480 || | | | || || | || || ||||| ||| || || ||| |||| ||||||| Sbjct 424 ATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTTG 483 Query 5481 CTATAATGCGCTTCTCCGGGGAGGCAAGCACTTTTCTGTTTAACACACTGGCCAATATGT 5540 | || ||| | ||||||||||| ||||| || ||||| || || || || || |||||| Sbjct 484 CGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATGC 543 Query 5541 TGTTCACCTTTATGAGGTACAACATACGGGGTGATGAATTCATATGCTTTGCTGGGGATG 5600 | ||||| ||| | | ||| || || | || | || || |||||||| || |||| Sbjct 544 TCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGATG 603 Query 5601 ATATGTGCGCGTCGCGAAGA-------TTGCAACCCACAAAGAA-GTTTGCTCACTTCCT 5652 | ||||| ||| | |||| || || | | | ||| |||| | | || | Sbjct 604 ACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGAAGGTTTCTTGAATT--T 661 Query 5653 AGACAAGCTTAAACTGAAAGCGAAGGTGCAATTCGNNNNNNNNNNNAATAAACCAACTTT 5712 | || || || ||||| || ||| || || ||||||||||| Sbjct 662 A------CTGAAGCTAAAAGCTAAAGTGGGTTT--------TACAGAA-AAACCAACTTT 706 Query 5713 TTGCGGTTGGCACCTGTGTCCCGATGGTATATATAAAAAGCCGCAACTTGTGCTAGAGAG 5772 ||| || ||| ||||| | |||| || | ||| || || || || | || || || Sbjct 707 TTGTGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAG 766 Query 5773 AATGTGCATCGCGAAAGAGATGAACAACCTGAGCA-ATTGCATTGATAATTACGCCATTG 5831 | ||||| || ||||||| ||| || |||| ||||||| |||||||||||||||| Sbjct 767 ATGCTGCATTGCAAAAGAGAGGAATGTGCT-AGCAGATTGCATCGATAATTACGCCATTG 825 Query 5832 AGGTGGCGTACGCATATAAGTTGGGGGAGAAGGCTGTGAATAGAATGGATGAGGAGGAAG 5891 | | | ||| || || |||||| || |||||| | ||||||||||| |||| Sbjct 826 AACTTGGGTATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAG 885 Query 5892 TCGCGGCGTTCTACAACTGCGTGAGAA---TCATAGTGCGAAACAAACACCTCATTCGCT 5948 | || |||| |||||| || | || ||||| | || || || ||| | | Sbjct 886 CTGAAGCATTCTTCAACTGTGTTAAAATTGTCATAAAG---AATAAGCATCTCCTAAAGT 942 Query 5949 CTGATGTGAAACAAGTATTTGAAGTGCTTTAATTAGTGTAGCTTAGG-TATTGCTA---T 6004 ||||||| || | | ||| || | | || ||||||||| | |||| | Sbjct 943 CTGATGTTCGTAAATTGTACGAA--GCATCATAAGGTCTAGCTTAGGTTCGCGCTAGTTT 1000 Query 6005 TGTATTGAATATTTATGGATG-TGATTGTAGA--TTTGTTGTAT-AAATACAAGTTTGAG 6060 || |||| |||||||||||| || |||||| |||||| || || |||| | Sbjct 1001 AGTTTTGATTATTTATGGATGTTGTGTGTAGAATTTTGTTAGATGAAGGTTTTGTTTCTG 1060 Query 6061 CGTTTAAGTAATAAGTTAGTGTGCCCTATAGTTGTTCACTGTGTGCCTGGGGCTGGCAA 6119 || ||| || || ||| |||| |||||||| ||||||| ||||| || || || Sbjct 1061 TGTCTAATCAACTAGGTAG---GCCC-ATAGTTGTGAACTGTGTTCCTGGTGCAGGTAA 1115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27165115579064