Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_002795.1 Length=8657 Score E Sequences producing significant alignments: (Bits) Value seq74459 347 7e-92 >seq74459 Length=1629 Score = 347 bits (384), Expect = 7e-92 Identities = 587/845 (69%), Gaps = 4/845 (0%) Strand=Plus/Plus Query 5176 CAACTATGTACTAAATTCGACAACAGGTTTAGAGTAGCCAAGGCTGCTCAGAGCATCGTG 5235 ||| | || || ||||| || || | ||||| | || |||||||| || || ||| Sbjct 111 CAATTGTGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTG 170 Query 5236 TGTTTCCAACACGCAGTTCTTTGCAGATTCGCCCCATATATGAGGTACATTGAGATGAAG 5295 || || ||||| || || ||||||||||| || || || ||||| || ||| ||| Sbjct 171 TGCTTTTCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAG 230 Query 5296 GTGCACGAGGCCTTACCAAAGAATTACTACATACACTCTGGTAAGGGGCTGGGCGAATTA 5355 || ||||| || || |||| | |||||| || |||||||||| ||| || | Sbjct 231 GTAATGGAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTT 290 Query 5356 AACGACTGGGTCAAGCGCGGAAAATTCCAAGGAGTGTGCACTGAATCCGATTATGAGGCT 5415 || || |||||| || || || |||||||| || ||||| ||||| || ||||| || Sbjct 291 AATGAGTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCA 350 Query 5416 TTCGATGCGTCGCAAGATGAGTACATCATGGCTTTTGAATTGGAGCTGATGAGGTATTTG 5475 || ||||| || || ||| | |||||||||||||||||| | | |||||| |||| || Sbjct 351 TTTGATGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTG 410 Query 5476 CGTATTCCTGGAGATCTCATTGAGGATTATAAATACATTAAGACCAGTCTTGGTTCTAAA 5535 | || || | ||| | | | || |||| | ||||||||| || ||||| ||| Sbjct 411 GGGATCCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAA 470 Query 5536 CTGGGAAATTTTGCAATAATGAGGTTCTCTGGTGAAGCAAGTACATTCCTGTTCAATACG 5595 ||||| |||||||| || ||||| ||||| || |||||||||||||| || ||||||||| Sbjct 471 CTGGGGAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACG 530 Query 5596 CTCGCGAATATGCTGTTCACTTTCATGCGTTATGAAATCAAGGGAAATGAGTTCATTTGC 5655 ||||| |||||||| |||||||| | ||||| | | ||||| ||| |||||| Sbjct 531 CTCGCTAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGC 590 Query 5656 TTTGCCGGCGATGACATGTGCGCG-CCCACACATCTGCAGACAACAGGGAGGCACAAATC 5714 ||||| || ||||||||||| ||| || | | |||| | ||| || || Sbjct 591 TTTGCAGGAGATGACATGTGTGCGAATCAAAGA-CTGCGGGTTTCAGCAGAACATGAAGG 649 Query 5715 ATTTTTAGATAAGCTTAAATTGAAAGCGAAGGTGCAGTTTACGGGCAAACCAACGTTCTG 5774 || || || || || | ||||| || ||| ||||| | |||||||| || || Sbjct 650 TTTCTTGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTG 709 Query 5775 CGGTTGGCATCTGTGCCCTGATGGAATCTACAAAAAACCACAGCTTGTACTTGAACGCAT 5834 || ||| | ||| | |||| || | || ||||| ||||| |||||||| | || Sbjct 710 TGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAG-AT 768 Query 5835 G-TGCATTGCAAGAGAATTGAACAATCTAGCTAACTGTATTGACAACTACGCTATCGAGG 5893 | |||||||||| ||| ||| ||||| | || || || || ||||| || || Sbjct 769 GCTGCATTGCAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAAC 828 Query 5894 TTGCATTTGCGTATCAGTTGGGGGAAAAGGCGCTCAATCGCATGGATGAAGAAGAAGTGG 5953 ||| | ||| || ||||| ||| || | | |||||||| ||||||| | Sbjct 829 TTGGGTATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTG 888 Query 5954 GGGCTTTTTACAATTGTGTGAGGATTATTGTGAGGAATAGGCACCTCCTCAAATCGGACG 6013 || || | ||| ||||| | ||| | | | ||||| ||| ||||| || || || | Sbjct 889 AAGCATTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATG 948 Query 6014 TTCGT 6018 ||||| Sbjct 949 TTCGT 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27561546593752