Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_003462.2 Length=9332 Score E Sequences producing significant alignments: (Bits) Value seq74459 219 3e-53 >seq74459 Length=1629 Score = 219 bits (242), Expect = 3e-53 Identities = 562/850 (66%), Gaps = 12/850 (1%) Strand=Plus/Plus Query 5624 CTTTGAGGAAAAGAAGTTGTCAAAAAGTATGGCCACAATTGAGAATCACTCTGGAAGGTC 5683 ||| || || |||||| ||||||||| |||| |||||| || || |||| | || Sbjct 5 CTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGTTC 64 Query 5684 TTGTGAAGATTGGCCAGTGGATAAAGCACTCATCTTCATGAAGTCCCAACTTTGCACCAA 5743 | |||| |||||| | ||| ||| | | |||||||| || ||| | ||||| || Sbjct 65 AAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACGAA 124 Query 5744 ATTTGACAACAGGTTCAGGAGTGCCAAAGCTGGACAGACTCTTGCTTGCTTTCAACATTC 5803 |||||| || | || ||| ||| || |||| ||| | | | |||||| || | Sbjct 125 ATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCACGC 184 Query 5804 AGTTCTTTGCAGATTTGCACCCTACATGAGATACATTGAATCCAAGGTTACAGAGGTGCT 5863 || || |||||||| ||||| ||||| || || || || ||||| | |||| | | Sbjct 185 CGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCGTT 244 Query 5864 TCCAAAAAATCTATACATTCATTCTGGAAAGAATATTGATGACCTAGCAGCTTGGGTGAC 5923 || | || | ||||| ||| ||| ||| | || || || | ||||| Sbjct 245 GCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTCCT 304 Query 5924 TACAAGTAAATTCAATGGTGTGTGCACCGAGTCTGATTATGAGGCATTTGATGCCTCGCA 5983 | |||| ||| | ||||| ||||| || || || ||||| ||||||||||| || || Sbjct 305 TCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCACA 364 Query 5984 AGATCATTTTATCCTGGCTTTTGAGCTTGAAGTCATGAAATTCTTGGGTTTGCCTTCCGA 6043 ||||| | ||| |||||||||| | | | ||| | | |||| | || || Sbjct 365 GGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGGGA 424 Query 6044 CCTCATTGCGGATTACACCTTCATCAAAACCCATTTGGGATCCAAACTAGGAAGTTTTGC 6103 | | || || | || || || ||||| | || || ||||| || | |||||| Sbjct 425 TTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTTGC 484 Query 6104 CATTATGCGCTTCACAGGTGAAGCAAGCACCTTCTTGTTCAATACAATGGCAAATATGCT 6163 |||||| | ||| | || |||||||| || || | |||||||| | || |||||||| Sbjct 485 GATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATGCT 544 Query 6164 TTTCACCTTTCTCAGGTATGATCTCAATGGGAGGGAAGCGATATGCTTTGCGGGTGATGA 6223 ||||| ||||| | |||||| | | ||| | || ||| |||||||| || ||||| Sbjct 545 CTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGATGA 604 Query 6224 CATGTGCGCTAACTCTAGGCTCAAGGTCACAAACAGGTTCTCAAATTTTCTTG-ATAAAA 6282 |||||| || || || || ||| | | ||| | || ||||||| || | Sbjct 605 CATGTGTGCGAATCAAAGACTGCGGGTTTC-AGCAGAACATGAAGGTTTCTTGAATTTAC 663 Query 6283 TTAAGCTTAAAGCTAAGGTGCAATTCACTGCTACGCCAACTTTCTGTGGATGGGGCCTGT 6342 | ||||| |||||||| ||| || || | | |||||||| ||||| ||| |||| Sbjct 664 TGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAACCTGA 723 Query 6343 GTGAACATGGTGTATTCAAAAAACCTGATCTTGTCCTGGAGAGAT--TGCAAATTGCTAG 6400 |||| | || || ||||| | || | || || |||| ||| ||||| | Sbjct 724 CGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGC--ATTGCAAA 781 Query 6401 AGAAACAAGGAACTTG---GAAAATTGTATTGATAACTATGCTATTGAAGTTTCTTGCGC 6457 ||| ||||| || | | |||| || ||||| || || |||||| || | || Sbjct 782 AGA---GAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGC 838 Query 6458 ATACAAGATG 6467 |||||| || Sbjct 839 CTACAAGTTG 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29719538004352