Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_003499.1 Length=8512 Score E Sequences producing significant alignments: (Bits) Value seq74459 302 2e-78 >seq74459 Length=1629 Score = 302 bits (334), Expect = 2e-78 Identities = 509/732 (70%), Gaps = 6/732 (1%) Strand=Plus/Plus Query 5078 TTTTCA--AAGTCTCAATTATGCACCAAATTTGACAATCGGTTTAGGGATGCGAAACGTG 5135 |||||| || || ||||| ||||| |||||||| ||||| ||||||||||| || || Sbjct 97 TTTTCATGAAATCACAATTGTGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTG 156 Query 5136 CACAAACCATTGTATGCTTCCAGCACGCGGTCCTATGTCGATTTGCTCCCTACATGCGCT 5195 ||||| | || || ||||| ||||| || || || |||| || || ||||| | | Sbjct 157 CACAATCGATAGTGTGCTTTTCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGT 216 Query 5196 ACATAGAGAAGAAGTTGAATGAGGTGCTGCCGTCAAAGTATTACATACACTCTGGAAAAG 5255 | || ||| | ||| | | |||| | |||| |||| ||||| || ||| || | Sbjct 217 ATATCGAGCAAAAGGTAATGGAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGG 276 Query 5256 GGCTTGAGGAACTCAACAGGTGGGTGATCGAGGGCCGTTTTGAGGGCGTTTGCACTGAGT 5315 || | ||||| || || |||||| | || ||| | || |||||||| || | Sbjct 277 GGTTGGAGGAGCTTAATGAGTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAAT 336 Query 5316 CAGATTATGAGGCCTTTGACGCATCGCAAGATCATTACATTGTCGCTTTCGAGATATGCT 5375 |||| ||||| || ||||| ||||| || ||||| ||||| | ||||| || || | Sbjct 337 CAGACTATGAAGCATTTGATGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCC 396 Query 5376 TGATGCGCTATCTTGGTTTGCCGAACGATCTCATAGAGGATTACAAATTCATTAAAACCC 5435 ||||| ||||| || | || | ||| | | | || || | || ||||| |||| Sbjct 397 TGATGGAGTATCTGGGGATCCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCC 456 Query 5436 ATTTGGGCTCAAAATTGGGTAATTTTGCGATCATGAGATTTTCTGGTGAGGCAAGCACTT 5495 | | || |||||| |||| ||||||||||| |||||||| || || || ||||| || | Sbjct 457 ACCTCGGTTCAAAACTGGGGAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACAT 516 Query 5496 TTCTATTCAACACTATGGCGAATATGCTGTTCACGTTCTTGCAGTACGATTTGAAGGGTA 5555 |||| ||||| || | || |||||||| ||||| || | |||| || || | || | Sbjct 517 TTCTCTTCAATACGCTCGCTAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAA 576 Query 5556 ATGAGCGAATCTGCTTTGCAGGTGATGATATGTGCGCAAATGGGCGTTTGCATGTTTCCA 5615 | ||| | || ||||||||||| ||||| ||||| || ||| | ||| |||| || Sbjct 577 AAGAGAGGATTTGCTTTGCAGGAGATGACATGTGTGCGAATCAAAGACTGCGGGTTT-CA 635 Query 5616 GTAAGCACAAGAA--CTTTATGAGCAAATTGAAGTTGAAGGCGAAGGTAAGCAATACCAT 5673 | || ||| ||| || ||| | ||||| | || || || || | ||| Sbjct 636 G-CAGAACATGAAGGTTTCTTGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGA 694 Query 5674 GAATCCCACCTTTTGCGGATGGAATCTATCTAGTGATGGGATTTTCAAGAAGCCCCAGCT 5733 || || || ||||| || ||||| || | | |||| ||||| ||||| |||||||| Sbjct 695 AAAACCAACTTTTTGTGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCT 754 Query 5734 TGTACTTGAGAGACTGTGCATAGCCAAGGAGACGAACAACCTCGCAAATTGCATTGACAA 5793 ||||||| ||| ||||| || || |||| ||| || ||| ||||||| || || Sbjct 755 CATACTTGAAAGATGCTGCATTGCAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAA 814 Query 5794 TTATGCCATTGA 5805 ||| |||||||| Sbjct 815 TTACGCCATTGA 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27097978068512