Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_003557.1 Length=8363 Score E Sequences producing significant alignments: (Bits) Value seq74459 302 2e-78 >seq74459 Length=1629 Score = 302 bits (334), Expect = 2e-78 Identities = 580/843 (69%), Gaps = 14/843 (2%) Strand=Plus/Plus Query 4970 TGCACTAAATGGGACAATCGCTTTCGATCGGCAAAAGCCGCCCAAACAATCGTCTGCTTT 5029 ||||| |||| || ||||| ||| | || || || || ||| | || || |||||| Sbjct 117 TGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTT 176 Query 5030 CAACATTCAGTGTTAATAAGATTCGCGCCTTACATGCGTTACATTGAGAAGAAGGTACTT 5089 || | ||| | |||||||| |||||||| | || || ||| | |||||| | Sbjct 177 TCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATG 236 Query 5090 GAGGTTTTACCAAAAAAGTACTATATTCACTCTGGTAAGGGCCTTGAAGAGCTGAATCAG 5149 |||| || || | |||| ||| || || ||||||||| | || ||||| ||| || Sbjct 237 GAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAG 296 Query 5150 TGGGTG-TGCGACAATAAGTTCCATGGGATCTGCACTGAGTCTGACTGTGAAGCTTTTGA 5208 ||||| | || ||| ||||| || | ||||| || || |||| |||||| ||||| Sbjct 297 TGGGTCCTTCGTGG-TAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGA 355 Query 5209 TGCCTCCCAAGATCAATACATCATGGCCTTCGAAATCGCACTAATGGAATATCTTGGTCT 5268 ||| || || ||||||||||||||||| || |||||||| || ||||| ||||| || | Sbjct 356 TGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGAT 415 Query 5269 ACCCAGATCTCTAATAAATGATTACAAATATATTAAAACGCATCTGGGCTGTAAGATGGG 5328 || || | | | || || || | | |||||| || || || || | || |||| Sbjct 416 CCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGG 475 Query 5329 CGCGCTGGCAATCATGAGGTTCTCTGGCGAAGCAAGCACCTTTTTATTCAACACCCTGGC 5388 | || || ||||| ||||| || |||||||| || ||| | ||||| || || || Sbjct 476 GAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGC 535 Query 5389 TAACATGCTTTTCACGTTTTTGAGGTATGATCTCAATGGGCAGGAAAGCATTTGTTTTGC 5448 ||| ||||| ||||| ||| | | |||||| | | ||| | || || ||||| ||||| Sbjct 536 TAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGC 595 Query 5449 TGGGGATGACATGTGTGCCAATCGTCGATTACGTG-TCAATCTCAAGCATGAGGACTTCC 5507 || |||||||||||||| |||| || | || | | | | || ||||| | ||| Sbjct 596 AGGAGATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAA-CATGAAGGTTTCT 654 Query 5508 TAGGCAAACTTAAATTGAAGGCGAAAGTGGCTTTCACCAAAAGACCAACCTTCTGTGGTT 5567 | ||| || | || || ||||||| ||| || ||| |||||| || ||||| | Sbjct 655 TGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCT 714 Query 5568 GGAATTTAACCCACTTTGGTATTTACAAAAAACCGCAATTGGTTTTTGAGCGGATG-TGC 5626 |||| | || | | ||| |||| || ||||| || | | |||| |||| ||| Sbjct 715 GGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGA-AAGATGCTGC 773 Query 5627 ATCGCAAAAGAAACTAATAATCT-GCACAATTGCATTGATAATTACGCCATTGAAATAAG 5685 || |||||||| | ||| || ||| ||||||| |||||||||||||||||| | | Sbjct 774 ATTGCAAAAGAGAGGAATGTGCTAGCA-GATTGCATCGATAATTACGCCATTGAACTTGG 832 Query 5686 TTTCGCCT---ATGTGAAAGGTGAACTTGCTGTCTGCCACATGGACAAAGAAGAACTCGA 5742 | |||| | ||||| ||||| ||||| || | ||||| | |||||| || Sbjct 833 GTATGCCTACAAGTTGAAA---GAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGA 889 Query 5743 CGCCTTTTACAATTGTGTGCGTGTGGTAGTTAAGAGCAAGCACCTTCTGAAGTCTAACGT 5802 || || | ||| ||||| | || | |||| ||||| || || |||||| | || Sbjct 890 AGCATTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGT 949 Query 5803 GCG 5805 || Sbjct 950 TCG 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26621621446024