Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_005343.1 Length=8741 Score E Sequences producing significant alignments: (Bits) Value seq74459 289 2e-74 seq41354 84.2 1e-12 >seq74459 Length=1629 Score = 289 bits (320), Expect = 2e-74 Identities = 570/834 (68%), Gaps = 8/834 (1%) Strand=Plus/Plus Query 5074 AAGAAGACTAGCAAGAGTGCTGCAACAATTGAGAACCATGCCCAACGCTCATGTAGGGAT 5133 ||||||||| || |||||||| | |||||| |||||||| || ||| | || Sbjct 15 AAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGTTCAAATCAAGAC 74 Query 5134 TGGCTTGCGGATGTAGGTCTGGTATTCATGAAGTCCCAGCTCTGCACCAAGTGGGACAAT 5193 |||| ||| ||| |||| |||||||| || || | ||||| || | || ||| Sbjct 75 TGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACGAAATTTGAAAAT 134 Query 5194 AGATTCAGGAATGCGAAGGCTGCACAGTCAATTGTTTGTTTTCAGCATGCAGTTCTATGC 5253 |||| ||| |||| ||||||||||| || || || || ||| || || || || ||| Sbjct 135 CGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCACGCCGTGCTCTGC 194 Query 5254 CGCTTTGCGCCATACATGAGGTACATAGAAATGAAGCTTAATGAGGTTCTCCCCCCAAAT 5313 | || || || ||||| ||||| || || ||| | | |||| | || || Sbjct 195 AGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCGTTGCCTGAGAAG 254 Query 5314 TTTTACATTCATAGTGGTAAGAGTCTGGAGGAATTGGATGCTTGGGTCAAGCGCTACAAA 5373 || ||||| |||||||||||| | ||||||| | ||| |||||| || || Sbjct 255 TTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTCCTTCGTGGTAAT 314 Query 5374 TTCTCTGGCGTCTGCACTGAGTCTGACTATGAAGCCTTCGATGCTAGCCAAGATCAGTAC 5433 ||| || || ||||| || || ||||||||||| || ||||| || ||||| ||| Sbjct 315 TTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCACAGGATCAATAC 374 Query 5434 ATAATGGCTTTCGAATTGGCCGTAATGAAGCATCTGCGTTTACCAGCAGACCTTATTGAA 5493 || |||||||| ||| | ||| | ||| || ||||| | | ||| || | | || Sbjct 375 ATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGGGATTTGGTGAAA 434 Query 5494 GACTACAAGTACATCAAAACACACTTGGGGTCCAAATTGGGCAGTTTTGCTATAATGCGG 5553 ||||| | | || || || ||| | || || ||| |||| | |||||| || ||| | Sbjct 435 GACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTTGCGATTATGAGA 494 Query 5554 TTTTCTGGCGAAGCAAGCACCTTCTTGTTCAATACTATGGCAAACATGCTTTTCACTTTC 5613 || || || |||||||| || || | |||||||| | || || ||||| |||||||| Sbjct 495 TTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATGCTCTTCACTTTT 554 Query 5614 ATGAGGTATGACATGAATGGGTCAGA-AGCAGTGTGCTTTGCCGGGGATG--ATATGTGC 5670 | | ||||||| | | ||| ||| || | | |||||||| || |||| || ||||| Sbjct 555 CTTAAGTATGACTTAAGTGGAAAAGAGAGGA-TTTGCTTTGCAGGAGATGACATGTGTGC 613 Query 5671 GCTTCGAAGCACTTGAGGGTGCAGAGTGAGCATGATAAGTTCTTGGACAAGCTCAAGTTG 5730 | || ||| ||| || | ||| || ||||| |||||| | || ||| | Sbjct 614 GAATCAAAG-ACTGCGGGTTTCAG-CAGAACATGAAGGTTTCTTGAATTTACTGAAGCTA 671 Query 5731 AAAGCCAAAGTGCAGTTTACAGAAAAGCCTACTTTTTGTGGTTGGAATTTGTGCCCTGAT 5790 ||||| |||||| ||||||||||| || ||||||||||| ||||| || | || Sbjct 672 AAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAACCTGACGCGGTAT 731 Query 5791 GGTATATACAAGAAACCGCAACTAGTGCTGGAGCGTATG-TGTATTGCTAGGGAAACAAA 5849 || || | |||||||| || || | || || | ||| || ||||| | || | || Sbjct 732 GGCATTTTTAAGAAACCCCAGCTCATACTTGAAAG-ATGCTGCATTGCAAAAGAGAGGAA 790 Query 5850 TAACCTAGCTAACTGCATTGACAATTATGCTATTGAGGTTGCATTTGCATACAA 5903 | ||||| | ||||| || ||||| || ||||| ||| | ||| ||||| Sbjct 791 TGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGCCTACAA 844 >seq41354 Length=320 Score = 84.2 bits (92), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 4815 GAACCATGGGGTAAAGCTAACTAATGCTGCTGAGCGTTTTGAAACTATTTACCCAAGACA 4874 ||| |||||| | |||| ||| |||||||||||||| ||| | |||||||||||||| Sbjct 71 GAATCATGGGAAGATCCTAAGTAACGCTGCTGAGCGTTTCGAAGCAATTTACCCAAGACA 130 Query 4875 CAGAGCAAGTGACACGGCAACATTCTTGATGGCAGTTAAAAAGAGATTGAGGTTCTCCAA 4934 | ||| ||||||| ||||| ||| | ||||| | | ||| | || | || ||||| Sbjct 131 TAAAGCCGGTGACACTGCAACGTTCATTATGGCTGCAAGGAAGCGCTTACGCTTTTCCAA 190 Query 4935 GCCCCAT-ATTGAAATGG 4951 ||| || | ||||||| Sbjct 191 -CCCTATGAAAGAAATGG 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27830096635960