Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_006550.1 Length=9104 Score E Sequences producing significant alignments: (Bits) Value seq74459 347 7e-92 >seq74459 Length=1629 Score = 347 bits (384), Expect = 7e-92 Identities = 589/847 (70%), Gaps = 10/847 (1%) Strand=Plus/Plus Query 5355 GACTTCGAGGAGAAGAAAACTGCAAAAAGTACTGCCACTATTGAGAATCACTCTGGTCGC 5414 |||||||| || ||||| ||| |||||||| |||||| ||||| || || |||| || Sbjct 3 GACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGT 62 Query 5415 TCGAACTTGGATTGGAAGATAGACACAGGCTTGGTGTTCATGAAGTCCCAGAATTGCACT 5474 || || || ||| || || ||||||||| |||||||| || || ||||| Sbjct 63 TCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACG 122 Query 5475 AAATTTGAAAACAGGTTTAGAGATGCTAAGGCTGCGCAAACTATTGTTTG--TTTC-CAC 5531 ||||||||||| | ||||| |||||||||||||| ||| | || || || |||| ||| Sbjct 123 AAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCAC 182 Query 5532 CACATTGTCTTAGCTAGATTTGCGCCCTTTATCAGGTATATTGAAATGAAGGTTAATGAG 5591 | | ||| || ||||| || || | ||||||||||| || ||||| | ||| Sbjct 183 GCCGTGCTCT--GC-AGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAG 239 Query 5592 GCGCTCCCAAAGAATTATTATATCCACAGTGGTAAGAGCCTTGACGAGTTAAATAATTGG 5651 ||| | || |||| | || ||||| ||||||||| | | || ||| | ||| | ||| Sbjct 240 GCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGG 299 Query 5652 GTCATTGGCAATGATTTCACAAGAGTGTGCACAGAGTCGGATTATGAGGCCTTCGACGCA 5711 ||| || | | ||||| | | || ||||| || || || ||||| || || || ||| Sbjct 300 GTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCA 359 Query 5712 TCACAAGACGCCTATATTCTGGCCTTTGAGATCTGCCTCATGGAACATTTGTGTCTTCCC 5771 ||||| || || || |||| ||||| ||| ||| ||||| || || | | || Sbjct 360 TCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCA 419 Query 5772 AGAGACCTAATTGAGGATTACAAGTATATCAAGACACATTTGGGCTCTAAGTTGGGAAAT 5831 || || | | | || || | | ||| ||||| || | || || || |||| ||| Sbjct 420 AGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAAT 479 Query 5832 TTTTCTATAATGAGATTCTCAGGTGAAGCATCAACATTCCTCTTCAACACTATTGCCAAC 5891 ||| | || ||||||||||| || |||||| ||||| |||||||| || | || || Sbjct 480 TTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAAT 539 Query 5892 ATGTTGTTCACTTTTTTGAAATATGATTTGAATGGTTCAGAGTCAATCTGCTTTGCAGGT 5951 ||| | ||||||||| | || ||||| || | ||| |||| || ||||||||||| Sbjct 540 ATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGA 599 Query 5952 GATGATATGTGTGCGAACAGGAGGTTAACACTTAAGACAGAGCATGATGGTTTTTTAAGC 6011 ||||| ||||||||||| || | || |||| ||||| ||||| || | Sbjct 600 GATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGAAGGTTTCTTGAAT 659 Query 6012 AAATTGAAATTAAAAGCTAAAGTCTGCTTTACATCATCACCGACTTTTTGTGGCTGGAAC 6071 | |||| ||||||||||||| | |||||| | ||| |||||||||||||||||| Sbjct 660 TTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAAC 719 Query 6072 CTTAGTTTCTATGGGATATATAAGAGGCCAGAATTAGTTTTTGAGAGACTCTGTATAGCA 6131 || | ||||| || | ||||| || | | | |||| ||| ||| || ||| Sbjct 720 CTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCATTGCA 779 Query 6132 AAAGAAAATGGCAATTTCAAG--GAATGCCTGGATAATTATGCAATTGAACTCTCCTATG 6189 ||||| | || | | | || || ||| | |||||||| || |||||||| |||| Sbjct 780 AAAGAGA--GGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATG 837 Query 6190 CTTACAA 6196 | ||||| Sbjct 838 CCTACAA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28990616461216