Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008020.1 Length=8739 Score E Sequences producing significant alignments: (Bits) Value seq74459 370 6e-99 >seq74459 Length=1629 Score = 370 bits (410), Expect = 6e-99 Identities = 592/841 (70%), Gaps = 14/841 (2%) Strand=Plus/Plus Query 5223 CAACTCTGCACAAAATTTGATAATCGTTTTCGTGATGCTAAAGCTGCTCAAAGCATCGTT 5282 ||| | ||||| |||||||| ||||| ||| | |||||||| ||||| ||| || || Sbjct 111 CAATTGTGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTG 170 Query 5283 TGTTTCCAGCACGAGGTATTATGCCGCTTTGCACCCTATATACGTTACATTGAGATGAAG 5342 || || |||| || | ||| | || ||||| || || | || || ||| ||| Sbjct 171 TGCTTTTCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAG 230 Query 5343 CTGAACGAGGTTTTACCTGATCGGTTTTACATTCATTCTGGCAAGGGCTTGGAAGAGTTG 5402 | | |||| || ||||| ||| ||||| ||| ||| ||||| ||||| ||| | Sbjct 231 GTAATGGAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTT 290 Query 5403 AATGATTGGGTCTTGAAGCATGATTTCTCGGGTGTGTGTACAGAGTCTGACTATGAAGCA 5462 ||||| |||||| | | ||||| ||||| || || || || |||||||||||| Sbjct 291 AATGAGTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCA 350 Query 5463 TTTGATGCCTCCCAAGATCAATATATCGTTGGTTTTGAGTTGGCAGTAATGGAGTACCTT 5522 |||||||| || || |||||||| ||| | | |||||| | || | |||||||| || Sbjct 351 TTTGATGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTG 410 Query 5523 GGGTTGCCGCGTGACTTGATCAATGACTATATCTACATCAAAACCCATCTTGGCTCGAAA 5582 ||| | || | || ||| | || |||||||| | || || ||||| || || || ||| Sbjct 411 GGGATCCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAA 470 Query 5583 CTTGGCAGTTTTGCCATAATGAGATTCTCAGGTGAGGCGAGTACCTTCTTGTTCAATACA 5642 || || | |||||| || ||||||||||| || || || ||||| || | |||||||| Sbjct 471 CTGGGGAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACG 530 Query 5643 ATGGCCAACATGCTCTTCACCTTCCTGCGGTATGAAATTCATGGGAATGAGAATATTTGC 5702 | || || ||||||||||| || || |||||| | ||| || |||| |||||| Sbjct 531 CTCGCTAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGC 590 Query 5703 TTTGCGGGGGATGATATGTGTGCTTCTAAGCGATTGCAGGT--CA--AGAATATCCATGC 5758 ||||| || ||||| |||||||| | | || ||| ||| || |||| |||| Sbjct 591 TTTGCAGGAGATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAA----CATGA 646 Query 5759 CAAGTTCCTATCAAA--ACTCAAGCTGAAGGCAAAAGTAGATTTCACAAGTCACCCAACT 5816 | ||| || | || ||| ||||| || || ||||| | ||| ||| | |||||| Sbjct 647 -AGGTTTCT-TGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACT 704 Query 5817 TTTTGCGGTTGGAATTTAACAAAGTATGGCATTTACAAGAAACCACAACTTGTGCTCGAG 5876 ||||| || ||||| | || ||||||||||| |||||||| || || | || || Sbjct 705 TTTTGTGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAA 764 Query 5877 CGTCTGTGTATTGCGAAGGAGACGAATAATTTGATCA-ATTGTATTGACAATTATGCCAT 5935 | || ||||| || |||| |||| | | || |||| || || ||||| ||||| Sbjct 765 AGATGCTGCATTGCAAAAGAGAGGAATGTGCT-AGCAGATTGCATCGATAATTACGCCAT 823 Query 5936 TGAGGTCTCTTACGCGTACAAGCTGGGTGAGTTAGCTCTGTGCGAGATGAATGAGGAGGA 5995 ||| | || || |||||| || || | ||| |||| |||||| ||||||| || Sbjct 824 TGAACTTGGGTATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGA 883 Query 5996 GGCCGAGGCGATGTACAACTGTGTCAGAATCATCGTAAAGAATAAGCATCACTTGAAGTC 6055 || || || | | ||||||||| | ||| || ||||||||||||||| | | ||||| Sbjct 884 AGCTGAAGCATTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTC 943 Query 6056 T 6056 | Sbjct 944 T 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27823702587336