Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008266.1 Length=8539 Score E Sequences producing significant alignments: (Bits) Value seq74459 311 5e-81 >seq74459 Length=1629 Score = 311 bits (344), Expect = 5e-81 Identities = 582/845 (69%), Gaps = 14/845 (2%) Strand=Plus/Plus Query 5110 TGTGCACCAAATTTGATAACCGATTCCGCGTAGCTAAAGCAGCGCAAAGTATAGTTTGCT 5169 ||||||| |||||||| || ||||| | | ||||| || || ||| ||||| |||| Sbjct 115 TGTGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCT 174 Query 5170 TTCAGCATGCAGTGCTCTGCCGTTTTGCGCCATACATGCGGTATATCGAGATGAAGGTGC 5229 || || || ||||||||| | || || || ||||| ||||||||||| ||||| Sbjct 175 TTTCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAA 234 Query 5230 AAGAGGTGCTCCCACGCAACTTCTACATTCATTCCGGCAAAGGTCTTGACGAGCTAAATG 5289 |||| | | || || |||||||| ||| || || || | || ||||| |||| Sbjct 235 TGGAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATG 294 Query 5290 CATGGGTGCGCCGTGGGAAGTTTGATGGCGTGTGCACAGAATCCGACTATGAAGCATTCG 5349 ||||| | ||||| || || | || || ||||| ||||| |||||||||||||| | Sbjct 295 AGTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTG 354 Query 5350 ATGCTTCGCAGGATGAATACATCATGGCTTTCGAGTTAGAGCTTATGAACTTCCTGGGTT 5409 |||| || |||||| |||||||||||||||| || | | || ||| | | ||||| Sbjct 355 ATGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGA 414 Query 5410 TGCCGCATGATCTCATAGAAGATTATAAGTATATAAAGACCAGCTTGGGCTCTAAGTTGG 5469 | || ||| | | |||| |||| | ||| |||||| | | || || || ||| Sbjct 415 TCCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGG 474 Query 5470 GCAACTTTGCGATAATGAGGTTCTCTGGGGAAGCCAGCACATTTCTCTTTAACACTCTGG 5529 | || |||||||| ||||| ||||| |||||||| || ||||||||||| || || || | Sbjct 475 GGAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCG 534 Query 5530 CAAATATGCTTTTCACATTTTTGAGGTATGAAGTTAAAGGCCACGAGTTTATATGCTTTG 5589 | |||||||| ||||| ||| | | |||||| | | || | ||| || ||||||| Sbjct 535 CTAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTG 594 Query 5590 CCGGGGATGATATGTGTGCTTCCGCTCA---TCTACGGAAAACGGAGAAGTACA-GCAAG 5645 | || ||||| ||||||| | ||| || ||| | || || ||| | | | Sbjct 595 CAGGAGATGACATGTGTG---CGAATCAAAGACTGCGGGTTTC--AGCAGAACATGAAGG 649 Query 5646 TTCCTTG-ATAAATTCAAGCTCAAAGCTAAGGTACAATTTACGGCCAAGCCCACGTTCTG 5704 || |||| || | | ||||| |||||||| || ||||| | || || || || || Sbjct 650 TTTCTTGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTG 709 Query 5705 CGGCTGGCACTTGAGCCCTGATGGGATCTATAAGAAACCCCAGCTGGTGTTTGAGCGCAT 5764 |||||| || ||| | |||| || | ||||||||||||||| | |||| | || Sbjct 710 TGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAG-AT 768 Query 5765 G-TGCATCGCCATGGAGCTGAACAACTTGAGCA-ACTGCATAGACAACTACGCAATCGAA 5822 | ||||| || | ||| ||| | |||| | ||||| || || ||||| || ||| Sbjct 769 GCTGCATTGCAAAAGAGAGGAATGTGCT-AGCAGATTGCATCGATAATTACGCCATTGAA 827 Query 5823 GTTACTTTTGCATATAAGTTGGGTGAGAGGGCACTTAACCGTATGGACGAGGAGGAAGCT 5882 || | ||| || |||||| || || | ||||| ||||| |||||| Sbjct 828 CTTGGGTATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCT 887 Query 5883 GGAGCATTCTATAACTGTGTGCGGCTCATCATCCGCAACAAGCACCTGCTCAAGTTTGAT 5942 | |||||||| |||||||| | |||| || ||||| || || |||| |||| Sbjct 888 GAAGCATTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGAT 947 Query 5943 GTGCG 5947 || || Sbjct 948 GTTCG 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27184297724936