Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_008292.1 Length=8386 Score E Sequences producing significant alignments: (Bits) Value seq74459 257 9e-65 >seq74459 Length=1629 Score = 257 bits (284), Expect = 9e-65 Identities = 637/965 (66%), Gaps = 12/965 (1%) Strand=Plus/Plus Query 4932 GATTTCGAAGAGAAGAAAACGAGCAAGAGTGCTGCAACCATAGAAAATCACAGCAATCGA 4991 || |||||||| ||||| || || |||||||| | || ||||| || || Sbjct 3 GACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGT 62 Query 4992 TCTATGAAGGAATGGGCGATAGATATTGGCCTTGTATTCTCGAAAAGCCAACTGTGCACC 5051 || | | || ||| | || ||| ||| | || ||| |||| ||| ||||||| Sbjct 63 TCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACG 122 Query 5052 AAATTTGACAACAGGTTCCGTGACGCAAAAGCTGCGCAGACTATTGTTTGTTTTCAGCAC 5111 |||||||| || | || | || || || ||||| || | || || || ||| ||| Sbjct 123 AAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCAC 182 Query 5112 GCCGTTTTGTGTAGGTTCGCGCCATACATGCGGTATATTGAGAAGAAGTTAAATGAGGTT 5171 ||||| | || || ||||| || ||||| ||||||| ||| | ||| ||| |||| Sbjct 183 GCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCG 242 Query 5172 CTGCCAGAGAAGTACTACATTCATTCCGGTAAAGGTTTAGACGAACTGAATGAATGGGTT 5231 |||| ||||||| |||||| ||| ||||| || || || || || ||||| ||||| Sbjct 243 TTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTC 302 Query 5232 AAGAGGGGTGGATTTGGCC---GCGTCTGCACAGAATCTGACTATGAAGCCTTTGATGCG 5288 | ||| |||| || | || ||||| ||||| ||||||||||| |||||||| Sbjct 303 CTTCGTGGTA-ATTT--CCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCA 359 Query 5289 AGCCAAGACCAATTCACCGTCGCATTTGAAATAAGTGTCATGAGGTATTTGGGCTTGCCA 5348 || || |||| || | | || |||||||| | ||| |||| |||| | ||| Sbjct 360 TCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCA 419 Query 5349 CCTAGCTTGATCGAGGATTACAAATTCATCAAAACTCACTTGGGCTCTAAATTAGGCAGT 5408 ||| | | || || | || || || || ||| | || || ||| | || | | Sbjct 420 AGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAAT 479 Query 5409 TTCGCTATTATGCGATTTTCAGGGGAAGCGAGTACCTTCCTGTTTAACACGATGGCCAAC 5468 || || |||||| |||| || |||||||| ||||| || || || || ||| | || || Sbjct 480 TTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAAT 539 Query 5469 ATGCTCTTTACTTTCCTCCAGTATGATCTCAGAGGGGATGAGCGCATATGCTTCGCGGGA 5528 |||||||| ||||| || ||||||| | || || | ||| | || ||||| || ||| Sbjct 540 ATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGA 599 Query 5529 GATGATATGTGCTCGAACAAAAAGTTGCACGTATCCGACAAACATAGCTCTTTCCTCAAA 5588 ||||| ||||| |||| ||| ||| || || | ||||| |||| | || Sbjct 600 GATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGAAGGTTTCTTGAAT 659 Query 5589 AAGTTAANNNNNNNGGCCAAGGTCGCGCATACGGATAGACCAACCTTTTGTGGTTGGAAT 5648 | | || || || | ||| || | |||||| |||||||| ||||| Sbjct 660 TTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAAC 719 Query 5649 CTAAGCCCCGATGGAATTTTTAAGAAACCACAGTTAGTGCTTGAAAGGTTATGCATAGCC 5708 || | | |||| |||||||||||||| ||| | | |||||||| | ||||| || Sbjct 720 CTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCATTGCA 779 Query 5709 AAGGAAACCAATAACCTCATTAATTGCATTGATAACTATGCAATTGAGGTTGCTTTCGCG 5768 || || | ||| || ||||||| ||||| || || ||||| ||| | || Sbjct 780 AAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGCC 839 Query 5769 TACCAAATGGGCGAGCGAGCCAAAAATTACATGACTGAAGAGGAGGTGGAAGCTTTCTAC 5828 ||| | || || | || | | ||| ||| || || | ||||| |||| | Sbjct 840 TACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGAAGCATTCTTC 899 Query 5829 AACTGCGTGCGCATAATTG---TGAAGAACAAACACCTTCTCAAGTCGGACGTGCTTCAA 5885 ||||| || | ||||| | ||||| || || || || ||||| || || | | || Sbjct 900 AACTGTGT---TAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTTCGTAAA 956 Query 5886 GTGTA 5890 |||| Sbjct 957 TTGTA 961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26695153005200