Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_009383.1 Length=8590 Score E Sequences producing significant alignments: (Bits) Value seq74459 352 2e-93 >seq74459 Length=1629 Score = 352 bits (390), Expect = 2e-93 Identities = 684/997 (69%), Gaps = 21/997 (2%) Strand=Plus/Plus Query 5053 AGAATTCGAGGACAAGAAAACCAGTAAGAGTGCTGCCACCATCGAAAATCACTCTGGTAG 5112 ||| ||||| || ||||| || || |||||||||| || ||||| || |||| | Sbjct 2 AGACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCG 61 Query 5113 ATCGTGCAGAGATTGGCTCATTGACATTGGTCTGATATTCTCGAAAAGCCAATTGTGCAC 5172 || ||| |||| || || || || | ||| |||| ||||||||||| Sbjct 62 TTCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCAC 121 Query 5173 GAAATTTGATAATCGCTTTCGAGTAGCCAAGGCTGCTCAGAGTATCGTTTGTTTCCAGCA 5232 ||||||||| ||||| ||| | | || |||||||| || || || || || || Sbjct 122 GAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCA 181 Query 5233 CGAGGTCCTATGCAGGTTTGCACCTTATATGCGTTACATTGAGAAGAAATTGCATGAGGT 5292 || || || ||||| || |||||||| || | || || ||| | || | |||| Sbjct 182 CGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGC 241 Query 5293 GCTCCCTGAGAGGTATTACGTTCATTCTGGGAAAGGTTTGGAAGAATTGAATTCATGGGT 5352 | | ||||||| || ||| | ||| ||| || || ||||| || | ||| ||||| Sbjct 242 GTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGT 301 Query 5353 CATTAAGGGTGGCTTCGGGGGCGTATGCACTGAGTCTGATTATGAAGCTTTTGATGCATC 5412 | || ||| ||| || || ||||| || || || |||||||| ||||||||||| Sbjct 302 CCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATC 361 Query 5413 ACAGGACCAGTACATGGTTGCATTTGAGGTTGCCGTTATGGAATATCTTGGCCTCCCAAG 5472 |||||| || ||||| | || ||||| | ||| | ||||| ||||| || ||||||| Sbjct 362 ACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAG 421 Query 5473 GGACTTGATAGAGGATTACAAATTCATTAAGACCCATCTCGGATCGAAATTGGGTAATTT 5532 ||| ||| | | || || | || ||||||||||| ||||| || ||| |||| ||||| Sbjct 422 GGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTT 481 Query 5533 TGCCATAATGCGATTCTCAGGGGAAGCGAGTACATTCTTGTTCAATACCATGGCGAATAT 5592 ||| || ||| ||||||| |||||||| |||||||| | |||||||| | || ||||| Sbjct 482 TGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATAT 541 Query 5593 GCTATTCACTTTCCTGAAGTATGAGATCAAAGGTCATGAGTTCATATGTTTTGCTGGAGA 5652 ||| |||||||| || |||||||| | | || | ||| || || ||||| ||||| Sbjct 542 GCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGA 601 Query 5653 TGATATGTGTGC--CTCTGAGA-GGTTGGCTACAAAGCATAAACATGTAGGTTTTTTGAG 5709 ||| |||||||| || ||| | || | | |||| |||||| |||||| |||| Sbjct 602 TGACATGTGTGCGAATCAAAGACTGCGGGTTTC--AGCA-GAACATGAAGGTTTCTTGAA 658 Query 5710 TAAACTGAAATTGAAGGCCAAAGT---CTTTATGGTTAGTAAACCTACATTCTGCGGTTG 5766 | |||||| | || || ||||| |||| | ||||| || || || || || Sbjct 659 TTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAG---AAAAACCAACTTTTTGTGGCTG 715 Query 5767 GAATTTGTGCCCTGATGGAATCTACAAAAAACCTCAATTGGTCATGGAACGTATG-TGTA 5825 ||| || | |||| || | || ||||| || | | | ||| | ||| || | Sbjct 716 GAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAG-ATGCTGCA 774 Query 5826 TCGCCAAGGAGAAAGCTAATCTGGCTAATTGCATTGATAACTATGCAATAGAAGTTTCTT 5885 | || || |||| | || || ||||||| ||||| || || || ||| || | Sbjct 775 TTGCAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGT 834 Query 5886 ATGCGTACAAGCTCGGTGAGAA--AGCTCTGAACAGGATGGATGAGGAGGAGGCTGCTGC 5943 |||| |||||| | | |||| ||| || |||||||||||| || |||| || Sbjct 835 ATGCCTACAAGTT--GAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGAAGC 892 Query 5944 GTTTTACAATTGCGTCCGGATCATAGTAAAGAATAAGCACTTGCTAAAATCTGACATACG 6003 || | ||| || || || | ||||||||||||| | ||||| ||||| | || Sbjct 893 ATTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTTCG 952 Query 6004 TAATTTGTACG-AGCAGAATGAG--TTGGCTTAGGTT 6037 ||| ||||||| |||| || || | ||||||||| Sbjct 953 TAAATTGTACGAAGCATCATAAGGTCTAGCTTAGGTT 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27347345964848