Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_009764.1 Length=8727 Score E Sequences producing significant alignments: (Bits) Value seq74459 349 2e-92 seq47308 78.8 5e-11 >seq74459 Length=1629 Score = 349 bits (386), Expect = 2e-92 Identities = 567/806 (70%), Gaps = 10/806 (1%) Strand=Plus/Plus Query 5042 AAGAGTGCTGCCATTATTGCTAACCATGCCGGAAGATCGTGCAGGGATTGGTTGGCAGAT 5101 || ||||||||||| |||| |||||||| || | || || ||| ||| Sbjct 27 AAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGTTCAAATCAAGACTGGCCAATCGAT 86 Query 5102 GTTGGCCTGGTTTTTATGAAGTCCCAACATTGCACAAAGTTCGACAACAGATTCAGAGAT 5161 ||| ||||||| ||||| || ||| ||||| || || || || |||| || ||| Sbjct 87 CAAGGCTTGGTTTTCATGAAATCACAATTGTGCACGAAATTTGAAAATCGATTTAGGGAT 146 Query 5162 GCCAAAGCGGCACAGTCAATCGTGTGCTTCCAACATGCCGTGTTATGTAGGTTCGCGCCT 5221 || || || ||||| || || |||||||| || |||||| | || || ||||| ||| Sbjct 147 GCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCACGCCGTGCTCTGCAGATTCGCACCT 206 Query 5222 TACATGAGATACATTGAAATGAAGTTACAGGAGGTGCTTCC-GAGTAATTTCTATGTTCA 5280 ||||| || || || || ||| || ||||| | | || ||| || ||||| | || Sbjct 207 TACATCAGGTATATCGAGCAAAAGGTAATGGAGGCGTTGCCTGAG-AAGTTCTACATCCA 265 Query 5281 TAGCGGAAAAGGGCTAGATGAGCTGAGCGAGTGGGTCAAGAAAGGGAAGTTCGAAGGAAT 5340 ||| || || ||| | || ||||| | ||||||||| || || ||| |||| | Sbjct 266 TAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTCCTTCGTGGTAATTTCCAAGGTGT 325 Query 5341 ATGCACCGAGTCGGACTATGAGGCATTCGATGCTTCTCAGGATCAATATATTATGGCTTT 5400 ||||| || || |||||||| ||||| ||||| || ||||||||||| || |||||||| Sbjct 326 TTGCACGGAATCAGACTATGAAGCATTTGATGCATCACAGGATCAATACATCATGGCTTT 385 Query 5401 TGAGCTCAAGGTTATGGAATATCTGGGGATTCCGAAAGACTTGATTGCAGACTATGTCTA 5460 ||| || | ||||| ||||||||||| || | || ||| | ||||||| | | Sbjct 386 TGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGGGATTTGGTGAAAGACTATATTTT 445 Query 5461 TATTAAGACTCACCTGGGCTCAAAGTTGGGCAATTTTGCAATCATGAGGTACTCAGGTGA 5520 ||||||||| ||||| || ||||| |||| |||||||| || ||||| | ||| || || Sbjct 446 TATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTTGCGATTATGAGATTCTCCGGGGA 505 Query 5521 AGCGAGCACCTTTTTGTTCAACACCATGGCTAATATGCTTTTCACTTTTTTGAGGTATGA 5580 ||| || || ||| | ||||| || | ||||||||||| ||||||||| | | |||||| Sbjct 506 AGCAAGTACATTTCTCTTCAATACGCTCGCTAATATGCTCTTCACTTTTCTTAAGTATGA 565 Query 5581 TGTGAAGGGCAATGAGTTCATCTGCTTCGCTGGTGATGACATGTGTGCAAATACCAAACT 5640 | | || || ||| || ||||| || || |||||||||||||| ||| | ||| Sbjct 566 CTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGATGACATGTGTGCGAATCAAAGACT 625 Query 5641 AAGGAAAGTCGACA-CTCATGAATCTTTCCTTTCCAAGT--TGAAACTCAAAGCTAAAGT 5697 || || || |||||| |||| || | | |||| || ||||||||||| Sbjct 626 GCGG-GTTTCAGCAGAACATGAAGGTTTC--TTGAATTTACTGAAGCTAAAAGCTAAAGT 682 Query 5698 TGGTTTTGTCAACAAGCCCACCTTTTGCGGCTGGAATCTG-TGCTCTGATGGCATATACA 5756 |||||| | || || || ||||| |||||||| ||| || | ||||||| | | Sbjct 683 GGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAACCTGACGCGGT-ATGGCATTTTTA 741 Query 5757 AAAAGCCACAGCTTGTTTTGGAGCGCTTATGCATTGCAAAGGAGACGAATAATCTCACAA 5816 | || || ||||| | | || | | ||||||||||| |||| |||| || || Sbjct 742 AGAAACCCCAGCTCATACTTGAAAGATGCTGCATTGCAAAAGAGAGGAATGTGCTAGCAG 801 Query 5817 GTTGTATTGACAACTACGCCATCGAA 5842 ||| || || || |||||||| ||| Sbjct 802 ATTGCATCGATAATTACGCCATTGAA 827 Score = 93.3 bits (102), Expect = 2e-15 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 6485 GGCGAGGTTGAGGGTGAGGTACTTGCGTGTGGACCTGAGGCTGAATTGATTCTTACCTGG 6544 || || || || |||||||| |||| ||||| || | |||||||| | ||||| ||| Sbjct 1474 GGTGACGTGGAAGGTGAGGTCATTGCTTGTGGGCCAGCAGCTGAATTCCTACTTACTTGG 1533 Query 6545 TACGGCTACCCATACAAGAAGTACTGTGAAGTTCGTGGGTCCACATTTGAGGTTGTAACC 6604 | || | |||||||| | |||||| ||||| || || ||||||||||| ||| Sbjct 1534 TGGGGTTGTGAGTACAAGAAATTCTGTGAGGTTCGGGGCAGTACTTTTGAGGTTGTCACC 1593 Query 6605 CTGGTTACAGATTTCTCAACAATTCCTGAAGAACTT 6640 || || || |||| |||||||| ||||||||| Sbjct 1594 CTTGTAACTGATTATAGTACAATTCCCGAAGAACTT 1629 >seq47308 Length=366 Score = 78.8 bits (86), Expect = 5e-11 Identities = 142/208 (68%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 6658 CTGTCTTACTCGACATCGGCGCAAGCTGATTATCATCAACGGTGATGCCACTTTTGCCCC 6717 ||| || || | ||||| || || ||| || ||||||| ||||||||||||||||| Sbjct 3 CTGCCTGACAAGGCATCGACGAAAATTGAGAATACTCAACGGAGATGCCACTTTTGCCCC 62 Query 6718 CGCCGGACAACACTAAAAGCATACTTGCGATTGCGACTGGGGCTGGATTGGCCTTGGTGC 6777 |||| || || |||| | || | || ||| | || || || ||| | || Sbjct 63 CGCCAGATAATACTAGAGCGATTTTAGCATGTGCAATAGGTGCCGGTGCGGCGCTCGTCA 122 Query 6778 TGTACACGTTAACAAGGAGCACATTACCGCAAGTTGGGGATAATATTCACTCTTTGCCAC 6837 | | | | |||| || |||||||| || || |||||| | |||||| ||||| | Sbjct 123 TTTTCGTGATAACTAGAAGCACATTGCCACACACAGGGGATCACATTCACAGCTTGCCTC 182 Query 6838 ACGGCGGATTTTATAAGGACGGCACAAA 6865 |||| || || ||| | || ||||| || Sbjct 183 ACGGTGGTTTCTATCAAGATGGCACGAA 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27785338295592