Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_009991.1 Length=9058 Score E Sequences producing significant alignments: (Bits) Value seq74459 356 1e-94 >seq74459 Length=1629 Score = 356 bits (394), Expect = 1e-94 Identities = 590/843 (70%), Gaps = 14/843 (2%) Strand=Plus/Plus Query 5344 CAATTGTGCACGAAATTTGATAATCGCTTTAGAGTAGCAAAGGCGGCCCAGAGTATAGTT 5403 |||||||||||||||||||| ||||| ||||| | || ||||| || || ||||| Sbjct 111 CAATTGTGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTG 170 Query 5404 TGCTTCCAGCATGAAGTGCTCTGTCGTTTCGCACCGTACATGAGGTACATTGAGAAGAAA 5463 ||||| || | |||||||| | |||||||| ||||| ||||| || ||| | || Sbjct 171 TGCTTTTCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAG 230 Query 5464 CTGCATCAAGCCTTACCAGGTAATTTCTACATACACTCTGGAAAGGGCCTTGAGGAGTTG 5523 | | || || || | || |||||||| || ||| ||||| | |||||| | Sbjct 231 GTAATGGAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTT 290 Query 5524 AATGAGTGGGTCATGCGAGGGAGATTTGACGGTGTCTGTACAGAGTCCGATTACGAAGCT 5583 |||||||||||| | || || | || | ||||| || || || || || || ||||| Sbjct 291 AATGAGTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCA 350 Query 5584 TTCGATGCATCACAGGACCAGTACATCATGGCGTTCGAGATCGAAATGATAAAGTACTTA 5643 || |||||||||||||| || ||||||||||| || || |||| |||| |||| | Sbjct 351 TTTGATGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTG 410 Query 5644 GGGCTACCCGCAGATCTTATTAGCGATTACGAGTTTATCAAGACTCACTTGGGCTCGAAA 5703 ||| | || ||| | | | || || ||||| ||||| ||| | || || ||| Sbjct 411 GGGATCCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAA 470 Query 5704 TTGGGCAATTTTGCCATAATGAGATTCTCAGGCGAGGCTAGTACATTCTTGTTCAACACA 5763 |||| |||||||| || ||||||||||| || || || |||||||| | ||||| || Sbjct 471 CTGGGGAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACG 530 Query 5764 ATGGCGAATATGCTTTTCACGTTCCTGAGGTATGAAATTAGGGGAAACGAATTCATATGC 5823 | || |||||||| ||||| || || | |||||| | || ||||| || || ||| Sbjct 531 CTCGCTAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGC 590 Query 5824 TTTGCCGGAGATGATATGTGTGCG--TCGAAGAGGCTAC--CCCTGAGCAGGGCTTATGA 5879 ||||| |||||||| ||||||||| || |||| || | | ||||| | |||| Sbjct 591 TTTGCAGGAGATGACATGTGTGCGAATCAAAGA--CTGCGGGTTTCAGCAGAAC--ATGA 646 Query 5880 GGGGTTCCTCAGCAAGCTTAAATTGAAAGCCAAAGT-TTTCTTCGTGAAAAGTCCGACCT 5938 || ||| | | || || | ||||| ||||| | || ||||| || || | Sbjct 647 AGGTTTCTTGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAA-ACCAACTT 705 Query 5939 TTTGTGGGTGGCACCTGAGTCCAGATGGTATCTACAAGAAACCACAATTGGTAATGGAAA 5998 ||||||| ||| |||||| | |||| || | |||||||| || | || | |||| Sbjct 706 TTTGTGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAA 765 Query 5999 GAATGTGCATAGCCAAGGAAAAGGGCAATT--TAATTGATTGTATAGATAATTATGCAAT 6056 || ||||| || || || | || | | || ||||| || |||||||| || || Sbjct 766 GATGCTGCATTGCAAAAGAGA--GGAATGTGCTAGCAGATTGCATCGATAATTACGCCAT 823 Query 6057 TGAACTTTCGTACGCCTACAAGATGGGTGAATTGGCTCTTTGTCGAATGGATGAGGAGGA 6116 ||||||| ||| ||||||||| || ||| | ||| | ||| ||||||||||| || Sbjct 824 TGAACTTGGGTATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGA 883 Query 6117 AACAGAAGCGTTCTATAACTGTGTTCGCATTGTTGTTAAGAACAAACACCTCTTGAAATC 6176 | | ||||| |||| ||||||||| ||||| | ||||| || || ||| | || || Sbjct 884 AGCTGAAGCATTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTC 943 Query 6177 AGA 6179 || Sbjct 944 TGA 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28843553342864