Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_010538.1 Length=8550 Score E Sequences producing significant alignments: (Bits) Value seq74459 282 2e-72 >seq74459 Length=1629 Score = 282 bits (312), Expect = 2e-72 Identities = 577/849 (68%), Gaps = 12/849 (1%) Strand=Plus/Plus Query 5087 CAACTTTGCACCAAGTTTGACAATCGTTTTAGGACTGCAAAGGCAGCTCAAAGTATAGTA 5146 ||| | ||||| || ||||| ||||| |||||| ||| ||||| || ||| ||||| Sbjct 111 CAATTGTGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTG 170 Query 5147 TGTTTCCAACATGCAGTCTTGTGTAGGTTCGCACCGTTCATGCGGTACATCGAGATGAAG 5206 || || || || || | || || |||||||| | ||| |||| |||||| ||| Sbjct 171 TGCTTTTCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAG 230 Query 5207 GTACATGAAGTGCTACCTAGCCAGTATTACATTCACTCAGGTAAAGGGCTCAGCGAATTA 5266 ||| || | | | ||| ||| ||||| || ||||| ||| | || | Sbjct 231 GTAATGGAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTT 290 Query 5267 AATGATTGGGTCAAACGAGGAAGCTTTGCCGGAGTTTGCACAGAATCTGATTACGAGGCT 5326 ||||| |||||| || || | || || |||||||| ||||| || || || || Sbjct 291 AATGAGTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCA 350 Query 5327 TTTGATGCGTCACAGGATGAGTACATCATGGCTTTCGAATTAGAATTAATGAAATACCTG 5386 |||||||| ||||||||| | |||||||||||||| ||| | | | ||| | || ||| Sbjct 351 TTTGATGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTG 410 Query 5387 GGTCTGYCCCA--CGATTTAGTTGAGGACTACAAATTCATTAAGACAAGCTTGGGCTCCA 5444 || | |||| ||||| || | ||||| | || |||||||| | | || || | Sbjct 411 GGGAT--CCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAA 468 Query 5445 AACTTGGCAATTTTGCTATTATGCGGTTCTCGGGTGAAGCCAGCACGTTCCTCTTCAACA 5504 |||| || |||||||| |||||| | ||||| || ||||| || || || |||||||| | Sbjct 469 AACTGGGGAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATA 528 Query 5505 CCCTGGCGAATATGCTGTTCACATTCATGCGTTATGACATTAAAGGCAATGAGTTTATAT 5564 | || || |||||||| ||||| || | |||||| | | || || ||| || | Sbjct 529 CGCTCGCTAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTT 588 Query 5565 GTTTCGCTGGTGACGACATGTGCGCCAATAAGGAATTGAAGGTTACTGGGGCTTACAAGG 5624 | || || || || |||||||| || ||| | | || |||| | | | | | | Sbjct 589 GCTTTGCAGGAGATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGAAG 648 Query 5625 GTTTCCTCGACAAGTTGAAGCTGAAGGCCAAAGTCCAGATGACTGGAACACCCACTTTTT 5684 ||||| | | ||||||| || || ||||| | || | || ||| ||||||| Sbjct 649 GTTTCTTGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTT 708 Query 5685 GCGGGTGGCACCTGACTCCCGATGGCATATATAAGAAGCCTCAATTGGTGCTGGAGAGGA 5744 | || ||| ||||||| | ||||||| | |||||| || || | | || || | || Sbjct 709 GTGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGA-AAGA 767 Query 5745 TG-TGCATCGCTATGGAGTTGAATAATCT-GCACAATTGCATCGATAATTATGCAATAGA 5802 || ||||| || | ||| |||| || ||| |||||||||||||||| || || || Sbjct 768 TGCTGCATTGCAAAAGAGAGGAATGTGCTAGCA-GATTGCATCGATAATTACGCCATTGA 826 Query 5803 GGTGGCGTATGCCTACTCTCTTGGTGAGAA--GGCGGTCAATCGCATGAGTGAGGAGGAA 5860 | | ||||||||| | | | |||| || || | ||| |||||| ||| Sbjct 827 ACTTGGGTATGCCTA--CAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAA 884 Query 5861 GTTGGCGCCTTTTACAACTGTGTACGGATAATCATAAGGAACAAGCATCTGYTAAAGTCT 5920 | || || || | ||||||||| || |||||| ||| |||||||| |||||||| Sbjct 885 GCTGAAGCATTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCT 944 Query 5921 GAAGTCCGT 5929 || || ||| Sbjct 945 GATGTTCGT 953 Lambda K H 0.635 0.408 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27219464992368