Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_012038.1 Length=8542 Score E Sequences producing significant alignments: (Bits) Value seq74459 334 4e-88 seq41354 80.6 1e-11 >seq74459 Length=1629 Score = 334 bits (370), Expect = 4e-88 Identities = 584/847 (69%), Gaps = 6/847 (1%) Strand=Plus/Plus Query 4950 GAGATTTCGAAGAAAAGAAGACAAGTAAGAGTGCAGCAACAATAGAAAACCATTCTGGAC 5009 |||| |||||||| |||||||| || ||||| || | ||| ||||||||| |||| | Sbjct 1 GAGACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCC 60 Query 5010 GCTCTTGTAGGGATTGGCTAGCAGATGTGGGGCTTATATTTATGAAGTCCCAGATTTGCA 5069 | || | || |||| | ||| || | | || ||||| || || | |||| Sbjct 61 GTTCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCA 120 Query 5070 CCAAATTCGACAACAGATTCCGTGTGGCCAAAGCTGCGCAATCGATAGTTTGCTTCCAGC 5129 | ||||| || || |||| | | || || ||||| ||||||||||| ||||| | Sbjct 121 CGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTC 180 Query 5130 ATTCAGTACTGTGTCGATTCGCCCCATATATGAGGTACATCGAGATGAAACTACAGGAAG 5189 | | || || || ||||||| || || || ||||| |||||| || || ||| | Sbjct 181 ACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGG 240 Query 5190 CCCTGCCGAAGAACTTCTATATTCATAGCGGCAAGGGCTTGGAAGAGTTGAACAAATGGG 5249 | |||| |||| ||||| || ||||| || ||||| ||||| ||| | || | |||| Sbjct 241 CGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGG 300 Query 5250 TGCTTGGTGGTAATTTCCGGGGTATTTGCACCGAATCTGACTATGAAGCTTTTGATGCAA 5309 | ||| |||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||| Sbjct 301 TCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCAT 360 Query 5310 GCCAAGACCAGCACATAGTGGCTTTTGAGCTGGCTTGCATGGAATACCTCGGACTACCAA 5369 || || || |||| |||||||||| | || ||||| || || || | |||| Sbjct 361 CACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAA 420 Query 5370 AAGACCTCATTGCCGACTATTGCTACATCAAAACGCACCTGGGTTCCAAATTGGGGTCTT 5429 || | | |||||| | || || || ||||| ||||| ||| ||||| || Sbjct 421 GGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATT 480 Query 5430 TCGCAATTATGCGCTTCTCTGGGGAGGCTAGCACTTTTCTTTTCAATACCATGGCAAACA 5489 | || |||||| | ||||| ||||| || || || ||||| |||||||| | || || | Sbjct 481 TTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATA 540 Query 5490 TGTTATTCACTTTCCTGCGGTACGAGTTGACTGGGAAAGAGTTCATTAGTTTCGCTGGGG 5549 || | |||||||| || ||| || || | ||| |||||| ||| | || || || | Sbjct 541 TGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAG 600 Query 5550 ATGACATGTGCGCCTCTAAGAGGTTGAGGGTAAGCGTTGAGCATGAGAGCTTTCTAGGGA 5609 |||||||||| || | | || || |||| | || ||||| || ||||| || Sbjct 601 ATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGA-AGGTTTCT--TGA 657 Query 5610 A---ACTAAAATTGAAAGCAAAAGTCAACTTCACTACCAACCCAACTTTTTGCGGGTGGT 5666 | ||| || | ||||| ||||| || || || ||||||||||| || ||| Sbjct 658 ATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGA 717 Query 5667 GTCTTACAACCGATGGGATCTTTAAAAAACCCCAACTAGTTTTCGAGAGGCTGTGCATAG 5726 || || |||| || ||||| |||||||| || | | || || ||||| | Sbjct 718 ACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCATTG 777 Query 5727 CTAAAGAAACCAATAACCTGGCTAATTGCATTGATAATTACGCAATTGAGATTTCCTATG 5786 | ||||| | ||| || || ||||||| ||||||||||| ||||| || |||| Sbjct 778 CAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATG 837 Query 5787 CTTACAA 5793 | ||||| Sbjct 838 CCTACAA 844 >seq41354 Length=320 Score = 80.6 bits (88), Expect = 1e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 4637 GCAAAAGAAAACAGAGAAGTGCGCAAAGGCTA-TCTCGTGAGCGATCAATTTACAGATGA 4695 ||||||||| |||| |||| || | || | | || || ||||| ||| | || || Sbjct 3 GCAAAAGAATTGCGAGA-GTGCAGAATTGGTAATGTTGTCAGTGATCAGTTTGCTGAAGA 61 Query 4696 GCACTCAAAA-AATAGGGGAAAAATACTCACAAATGCCGCTGAGCGCTTTGAAGCCATTT 4754 || ||| | ||| || || || || | || || |||||||| || ||||| |||| Sbjct 62 TCA-TCACAGGAATCATGGGAAGATCCTAAGTAACGCTGCTGAGCGTTTCGAAGCAATTT 120 Query 4755 ACCCAAGGCACAAAAACAGCGATACTGTTACTTTTCTTATGGCCGTGAAGAAGCGCTTAA 4814 ||||||| || ||| | | || |||| || || ||||||| | | |||||||||| Sbjct 121 ACCCAAGACATAAAGCCGGTGACACTGCAACGTTCATTATGGCTGCAAGGAAGCGCTTAC 180 Query 4815 GATTTTCTAAACCTATG 4831 | ||||| || |||||| Sbjct 181 GCTTTTCCAACCCTATG 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27193888797872