Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_012869.1 Length=8433 Score E Sequences producing significant alignments: (Bits) Value seq74459 345 2e-91 seq41354 104 1e-18 >seq74459 Length=1629 Score = 345 bits (382), Expect = 2e-91 Identities = 681/997 (68%), Gaps = 18/997 (2%) Strand=Plus/Plus Query 4931 GAGTTTGAAGAGAAGAAGACGAGTAAGAGTGCAGCAACTATTGAAAATCACAGCAACCGC 4990 || || ||||| |||||||| || ||||| || | |||||||| || ||| Sbjct 3 GACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGT 62 Query 4991 TCATGCAAGGATTGGCTCGCTGATGTTGGTATGGTCTTCTCAAAATCACAATTATGCACA 5050 ||| | || |||| ||| || |||| ||| ||||||||||| ||||| Sbjct 63 TCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACG 122 Query 5051 AAATTTGACAATCGTTTCAGAGATGCCAAAGCCGCGCAAACGATCGTATGTTTCCAACAT 5110 |||||||| ||||| || || ||||| || || || ||| |||| || || || || Sbjct 123 AAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCAC 182 Query 5111 TCAGTGCTTTGTCGCTTTGCGCCGTACATGAGATATATCGAGAAGAAACTTCACGAGGTG 5170 | ||||| || | || || || ||||| || ||||||||| | || | |||| | Sbjct 183 GCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCG 242 Query 5171 TTGCCCGAGAAGTATTACATACATTCCGGAAAGGGTTTAGAGGAGCTTAATTCATGGGTG 5230 ||||| ||||||| ||||| ||| || ||||| || |||||||||||| ||||| Sbjct 243 TTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTC 302 Query 5231 CAAATAGGGCGTTTTGACTCATTGTGTACTGAATCTGATTATGAAGCGTTTGATGCGAGT 5290 | || ||| | | || || ||||| || |||||||| |||||||| Sbjct 303 CTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCA 362 Query 5291 CAAGATCAATACATCATGGCTTTCGAGATATGCCTCATGCGGTACCTTGGCCTGCCGAAC 5350 || |||||||||||||||||||| || || ||| ||| ||| || || | || | Sbjct 363 CAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGG 422 Query 5351 GACTTGATTGAAGATTACACCTACATCAAGACCCATCTGGGATCCAAGTTGGGGAATTTC 5410 || ||| | |||| || | | || |||||||| || || || || |||||||||| Sbjct 423 GATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTT 482 Query 5411 TCGATCATGCGCTTTTCTGGCGAAGCGAGCACATTTCTCTTCAACACGATGGCCAATATG 5470 |||| ||| | || || || ||||| || |||||||||||||| ||| | || |||||| Sbjct 483 GCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATG 542 Query 5471 CTGTTCACATTTCTACAATATGATATCAAGGGAGATGAGCGAATTTGCTTCGCAGGCGAT 5530 || ||||| ||||| | ||||| | | ||| | ||| | |||||||| ||||| ||| Sbjct 543 CTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGAT 602 Query 5531 GATATGTGTTCAAACAAAAAACTGCACAAATCGGAAAAACACGAAGGGTTTCTGGGGAA- 5589 || |||||| | || ||| ||||| || | | |||| ||| ||||||| ||| Sbjct 603 GACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGAA-GGTTTCT--TGAAT 659 Query 5590 --GCTAAAATTAAAAGCCAAGGTGTGTCACACTTCAAGTCCAACCTTCTGCGGGTGGAAC 5647 || || ||||||| || ||| || || || ||||| || || || |||||| Sbjct 660 TTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAAC 719 Query 5648 TTGAGTCCAGACGGAATCTTCAAGAAACCACAGCTCGTGCTTGAGCGTATG-TGCATCGC 5706 ||| | | || || || |||||||| |||||| | ||||| | ||| ||||| || Sbjct 720 CTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAG-ATGCTGCATTGC 778 Query 5707 CAAAGAAACCAATAACTTGGCCAACTGCATAGACAATTATGCAATTGAAGTTTCCTATGC 5766 ||||| | ||| | || | ||||| || ||||| || |||||| || ||||| Sbjct 779 AAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGC 838 Query 5767 TTATCTGATGGGTGAGAGAGC-CAAAGAACGT---ATGAGTGAGGAGGAAGTTGACGCTT 5822 || | ||| ||| | | | || ||| |||||| |||| ||| || | Sbjct 839 ----CTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGAAGCAT 894 Query 5823 TCTACAATTGCGTGCGAATCATCATCAAAAACAAGCACCTGCTCAAGTCCGACGTTCGTC 5882 ||| ||| || || ||| |||| || || ||||| || || ||||| || |||||| Sbjct 895 TCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTTCGTA 954 Query 5883 ATGTGTACGAGACGAACATTGATCTGTAGCTTAGGTT 5919 | ||||||| | | || | | | ||||||||||| Sbjct 955 AATTGTACGA-AGCATCA-TAAGGTCTAGCTTAGGTT 989 >seq41354 Length=320 Score = 104 bits (114), Expect = 1e-18 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 4690 TGGGAAAATCCTTACGAACGCAGCTGAGCGTTTCGAAACGATTTACCCACGGCATAGAGC 4749 |||||| ||||| | ||||| ||||||||||||||| | ||||||||| | |||| ||| Sbjct 77 TGGGAAGATCCTAAGTAACGCTGCTGAGCGTTTCGAAGCAATTTACCCAAGACATAAAGC 136 Query 4750 ATCAGATACTGTTACCTTTATTATGGCTGTTAGAAAACGACTGAGATTTTCTAGCCCTAT 4809 || |||| || || |||||||||| || || || | | ||||| | |||||| Sbjct 137 CGGTGACACTGCAACGTTCATTATGGCTGCAAGGAAGCGCTTACGCTTTTCCAACCCTAT 196 Query 4810 GAAGGAATCAGCGAAATT-GAGTCAAGCAATGCCCTATGGTCCATTTCTGCTTCGGGAAT 4868 ||| ||| | || || || ||| | | | |||||||| ||| |||| ||| | Sbjct 197 GAAAGAAATGGGTAAGTTCAAGAAGAGCCAAG-CATATGGTCCCTTTTTGCTCGAGGAGT 255 Query 4869 TTTTGAAAAGGGTGCCTCTGAAACCA 4894 | |||| || ||||| || |||||| Sbjct 256 TCTTGAGGAGAGTGCCACTTAAACCA 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26845413147864