Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_013006.1 Length=8517 Score E Sequences producing significant alignments: (Bits) Value seq74459 396 1e-106 >seq74459 Length=1629 Score = 396 bits (438), Expect = 1e-106 Identities = 664/953 (70%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 5079 GACTTTGAGGAAAAGAAAACAAGTAAAAGCGCTGCAACTATTGAGAATCACAGCAACAGA 5138 ||||| || || ||||| || ||||| ||||| | ||||| || || | | Sbjct 3 GACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGT 62 Query 5139 TCTATGCGGGAGTGGGCTATTGATATCGGTTTGGTCTTCTCCAAGAGCCAACTTTGCACA 5198 || | | || ||| | || ||| || ||||| ||| || ||| | ||||| Sbjct 63 TCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACG 122 Query 5199 AAGTTTGACAATCGGTTTAGGGATGCCAAAGCTGCTCAAACTATTGTTTGTTTCCAACAT 5258 || ||||| ||||| ||||||||||| || ||||| ||| | || || || || || Sbjct 123 AAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCAC 182 Query 5259 GCAGTTCTGTGCAGGTTTGCACCTTTCATGCGCTATATCGAGAAGAAGCTGAACGAGGTG 5318 || || || ||||| || ||||||| ||| | ||||||||| | ||| | | |||| | Sbjct 183 GCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCG 242 Query 5319 CTGCCTGAGAAGTATTATATTCACTCTGGTAAGGGTCTGGAAGAGCTCAATGCATGGGTC 5378 |||||||||||| || || || ||||||||| |||| ||||| |||| |||||| Sbjct 243 TTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTC 302 Query 5379 ATCAGAGGCGAGTTCAAAGACACGTGCACTGAGTCAGACTATGAAGCCTTTGACGCAAGT 5438 | | || | ||| ||| ||||| || |||||||||||||| ||||| ||| Sbjct 303 CTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCA 362 Query 5439 CAAGATCAATATATCGTGGCGTTTGAGGTGCATCTTATGAAGTTCTTGGGGTTACCAAAT 5498 || |||||||| ||| |||| ||||| | || ||| ||| ||||| | |||| Sbjct 363 CAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGG 422 Query 5499 GACCTCATTGAAGACTACAAATTCATCAAAACGCATCTTGGTTCCAAGCTCGGATCATTT 5558 || | | ||||||| | || || || || || || ||||| || || || ||| Sbjct 423 GATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTT 482 Query 5559 GCCATCATGAGGTTCTCCGGCGAAGCTAGCACTTTCCTATTCAACACTATGGCTAACATG 5618 || || ||||| |||||||| ||||| || || || || ||||| || | ||||| ||| Sbjct 483 GCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATG 542 Query 5619 CTGTTCACCTTTTTGAGATATGACATTAAG-GGCGCTGAGAGGATTTGCTTTGCGGGTGA 5677 || ||||| ||| | | |||||| ||||| || ||||||||||||||||| || || Sbjct 543 CTCTTCACTTTTCTTAAGTATGAC-TTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGA 601 Query 5678 TGACATGTGCTCAAACACGAGACTGCATGTGAGCTCGAAACATGAAGGTTTCCTCAAGAA 5737 ||||||||| | || ||||||| || | |||||||||||||| | || Sbjct 602 TGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGAAGGTTTCTTGAATTT 661 Query 5738 GTTGAAGCTCAAAGCAAAGGTTGCTCATACAGTGAATCCCACTTTTTGTGGGTGGAACCT 5797 ||||||| ||||| || || | | ||||| || || ||||||||||| ||||||| Sbjct 662 ACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAACC- 720 Query 5798 TTGCTCGG-ACGGTATCTTTAAAAAACCACAACTTGTCTTTGAGAGACTTTGCATAGCGA 5856 | | ||| | || || ||||| ||||| || || | |||| ||| ||||| || | Sbjct 721 TGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCATTGCAA 780 Query 5857 AGGAGACCAACAATCTGGTAAATTGCATTGATAATTACGCTATAGAAGTGGCGTATGCTT 5916 | |||| || || | | ||||||| ||||||||||| || ||| | | |||||| | Sbjct 781 AAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGCCT 840 Query 5917 ACCAAATGGGAGAGAAGGCGGT-YGCGCGCATGAACGAAGAAGAGGTTGACGCATTCTAT 5975 || | || ||| || || | | | ||| | || ||||| | ||| ||||||| Sbjct 841 ACAAGTTGAAAGAACTCGCTGTGTGTGAG-ATGGATGAGGAAGAAGCTGAAGCATTCTTC 899 Query 5976 AACTGCGTCAGAGTCATCATTAAGAATAAGCATTTGCTTAAATCTGATGTCCG 6028 ||||| || | | | |||| |||||||||||| | || || |||||||| || Sbjct 900 AACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTTCG 952 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27113963190072