Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_016080.1 Length=8315 Score E Sequences producing significant alignments: (Bits) Value seq74459 307 6e-80 >seq74459 Length=1629 Score = 307 bits (340), Expect = 6e-80 Identities = 585/860 (68%), Gaps = 6/860 (1%) Strand=Plus/Plus Query 4942 GGCTTGGTGTTCTCCAAAAGTCAGCTGTGCACAAAGTTCGATAATAGATTCAGGGACGCA 5001 |||||||| ||| ||| || ||||||| || || || ||| |||| ||||| || Sbjct 90 GGCTTGGTTTTCATGAAATCACAATTGTGCACGAAATTTGAAAATCGATTTAGGGATGCT 149 Query 5002 AAAGCTGCGCAGACTATCGTGTGTTTCCAGCACGCAGTGCTCTGCAGGTTCGCGCCGTAC 5061 || ||||| || | || ||||| || ||||| ||||||||||| ||||| || ||| Sbjct 150 AAGGCTGCACAATCGATAGTGTGCTTTTCTCACGCCGTGCTCTGCAGATTCGCACCTTAC 209 Query 5062 ATGAGGTACATTGAGAAAAAATTGAACGAGGTGCTGCCCAGAAAGTACTACATCCACTCG 5121 || ||||| || ||| |||| | | |||| | |||| |||| ||||||||| Sbjct 210 ATCAGGTATATCGAGCAAAAGGTAATGGAGGCGTTGCCTGAGAAGTTCTACATCCATAGT 269 Query 5122 GGGAAGAAACTTGAGGACCTGAATGAGTGGGTTATGGAGGGGCGCTTCGACGGTCTGTGT 5181 || ||| | ||||| || ||||||||||| | || ||| | ||| | || Sbjct 270 GGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGC 329 Query 5182 ACCGAGTCTGACTATGAAGCTTTTGATGCGAGCCAAGACCAATACATAGTCGCATTTGAG 5241 || || || ||||||||||| |||||||| || || |||||||| | || ||||| Sbjct 330 ACGGAATCAGACTATGAAGCATTTGATGCATCACAGGATCAATACATCATGGCTTTTGAA 389 Query 5242 ATCTGCTTGATGAGATACCTTGGTTTACCAAATGATCTCATTGAGGATTACAAATTTATC 5301 ||| | ||||| || || || | |||| ||| | | | || || | ||||| Sbjct 390 ATCGCCCTGATGGAGTATCTGGGGATCCCAAGGGATTTGGTGAAAGACTATATTTTTATT 449 Query 5302 AAAACTCACCTGGGCTCCAAGTTGGGCAATTTCGCCATCATGCGCTTCTCCGGGGAAGCG 5361 || || ||||| || || || |||| ||||| || || ||| | |||||||||||||| Sbjct 450 AAGACCCACCTCGGTTCAAAACTGGGGAATTTTGCGATTATGAGATTCTCCGGGGAAGCA 509 Query 5362 AGTACTTTCCTGTTCAACACCATGGCTAACATGCTTTTCACCTTCCTAAGGTATGATTTG 5421 ||||| || || ||||| || | ||||| ||||| ||||| || || | |||||| || Sbjct 510 AGTACATTTCTCTTCAATACGCTCGCTAATATGCTCTTCACTTTTCTTAAGTATGACTTA 569 Query 5422 AGAGGTGATGAATACATATGCTTTGCTGGCGATGATATGTGCGCCAACAAGAAGTTGCAT 5481 || || | || || |||||||| || ||||| ||||| || || | | ||| Sbjct 570 AGTGGAAAAGAGAGGATTTGCTTTGCAGGAGATGACATGTGTGCGAATCAAAGACTGCGG 629 Query 5482 GTATCAAAGAAACACGAGGGTTTCCTGGGGAAGCTGAAACTGAAGGCCAAAGTGGCCATT 5541 || ||| |||| || |||||| || ||||| || || || ||||||| || Sbjct 630 GTTTCAGCAGAACATGAAGGTTTCTTGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTT 689 Query 5542 TCGACTAGCCCGACTTTTTGTGGGTGGAACTTGAGTAGCGACGGGATTTACAAGAAACCG 5601 | | || ||||||||||| |||||| ||| | | || |||| |||||||| Sbjct 690 ACAGAAAAACCAACTTTTTGTGGCTGGAACCTGACGCGGTATGGCATTTTTAAGAAACCC 749 Query 5602 CAGCTCGTACTTGAGCGCCTCTGTATCGCTAAGGAGACTAACAACTTGGTCAACTGTATT 5661 |||||| ||||||| | ||| || || || |||| || | | | || || Sbjct 750 CAGCTCATACTTGAAAGATGCTGCATTGCAAAAGAGAGGAATGTGCTAGCAGATTGCATC 809 Query 5662 GACAACTATGCTATAGAGGTCTCCTACGCATACAAGATGGGGGAGAAGGCCCTATGTAAG 5721 || || || || || || | || || |||||| || || || | ||| || Sbjct 810 GATAATTACGCCATTGAACTTGGGTATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAG 869 Query 5722 ATGAACGAGGAGGAGGTTGAAGCCTTCTACAACTGCGTCCGCATAATAGTC---AAGAAT 5778 ||| | ||||| || | |||||| |||| |||||| || | ||| ||| |||||| Sbjct 870 ATGGATGAGGAAGAAGCTGAAGCATTCTTCAACTGTGT---TAAAATTGTCATAAAGAAT 926 Query 5779 AAGCATCTGCTCAAGTCGGA 5798 |||||||| || ||||| || Sbjct 927 AAGCATCTCCTAAAGTCTGA 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26468164279048