Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_016440.1 Length=8638 Score E Sequences producing significant alignments: (Bits) Value seq74459 387 8e-104 >seq74459 Length=1629 Score = 387 bits (428), Expect = 8e-104 Identities = 627/890 (70%), Gaps = 18/890 (2%) Strand=Plus/Plus Query 4968 GACTTTGAGGAAAAGAAGACCTCAAAAAGTGCAGCTACTATCGCCAACCATGCAGGCCGC 5027 ||||| || || |||||||| ||||||||||| || | || | |||||||| ||||| Sbjct 3 GACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGT 62 Query 5028 TCATGCAGGGACTGGTTAATTGACACAGGGCTAGTATTTATGAAGAGCCAGCACTGCACG 5087 ||| |||||| ||| || ||| | || || ||||| || |||||| Sbjct 63 TCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACG 122 Query 5088 AAATTTGATAATCGCTTTAGGGATGCAAAAGCGGCACAGGCTATAGTATGTTTCCAGCAC 5147 |||||||| ||||| ||||||||||| || || ||||| | ||||| || || ||| Sbjct 123 AAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCAC 182 Query 5148 GCCGTACTCTGCAGACTAGCTCCTTTCGTTCGTTACATTGAACGGAAGATAGCTGAAGTG 5207 ||||| ||||||||| | || |||| | | | || || || | ||| || || | | Sbjct 183 GCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCG 242 Query 5208 CTTCCAGAGAAATTTTACATACATAGCGGTAAGGGTTTGGAAGAATTGAATGCATGGGTC 5267 | || ||||| || ||||| ||||| |||||||| ||||| || | |||| |||||| Sbjct 243 TTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTC 302 Query 5268 ACTCGTGGAAGGTTTGAAGGAGTTTGTACTGAATCAGATTATGAAGCTTTTGATGCTAGC 5327 |||||| | || |||| ||||| || |||||||| |||||||| |||||||| Sbjct 303 CTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCA 362 Query 5328 CAGGATCAGTATATACTTGCTTTTGAGCTACATGTCATGAAATACCTTGGATTGCCTAGG 5387 |||||||| || || | |||||||| | | ||| | || || || | || ||| Sbjct 363 CAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGG 422 Query 5388 GACCTCATAGAAGATTACAAGTTCATTAAAATGCACCTAGGGTCAAAACTTGGCAATTTC 5447 || | | |||| || | || ||||| | ||||| || |||||||| || ||||| Sbjct 423 GATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTT 482 Query 5448 GCTATAATGAGATTCTCTGGGGAGGCAAGTACCTTTTTGTTCAATACAATGGCAAATATG 5507 || || ||||||||||| ||||| |||||||| ||| | |||||||| | || |||||| Sbjct 483 GCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATG 542 Query 5508 CTTTTTAC-CTTCTTGAGATATGAGATCAAAGGCCATGAGCGTATCTGTTTTGCAGGTGA 5566 || || || ||||| || ||||| | | || | ||| | || || |||||||| || Sbjct 543 CTCTTCACTTTTCTTAAG-TATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGA 601 Query 5567 TGACATGTGCGCCAATGCCCGACTCCGCCACCGACTTGACCAGGA---GAA-GTTTCTAG 5622 ||||||||| || ||| |||| || | || | ||| | ||| |||||| | Sbjct 602 TGACATGTGTGCGAATCAAAGACTGCG-----GGTTTCAGCAGAACATGAAGGTTTCTTG 656 Query 5623 -GGTTGCTCAAGCTAAAGGCAAAGGTATCATTTACGCAAAAACCAACTTTTTGCGGATGG 5681 || || |||||||| || || || ||||| |||||||||||||||| || ||| Sbjct 657 AATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGG 716 Query 5682 AA-CTTATGTTCAG-ATGGTATTTACAAGAAACCACAGCTTGTGCTTGAGAGGTTGTGCA 5739 || || | | | | |||| |||| |||||||| ||||| | ||||| || | |||| Sbjct 717 AACCTGACG--CGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCA 774 Query 5740 TAGCGAAAGAGACCAATAACCTTGCTTGCTGCATAGATAATTATGCACTTGAGGTAGCTT 5799 | || ||||||| ||| || || ||||| |||||||| || |||| | | | Sbjct 775 TTGCAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGT 834 Query 5800 TTGCTTACAAGATGGGTGAGCGGGCTGT-TCTGCGTATGGATgaagaaga 5848 ||| |||||| || || | ||||| | || | |||||||| ||||| Sbjct 835 ATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAG-ATGGATGAGGAAGA 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27500803131824