Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_017859.1 Length=8601 Score E Sequences producing significant alignments: (Bits) Value seq74459 394 5e-106 >seq74459 Length=1629 Score = 394 bits (436), Expect = 5e-106 Identities = 663/954 (69%), Gaps = 4/954 (0%) Strand=Plus/Plus Query 5040 AGATTTTGAAGCAAAGAAAACAGCTAAAAGTGCAGCCACCATAGAAAATCATGCTGGACG 5099 ||| || |||| ||||| || | |||||||| |||| || ||||| |||||||| || Sbjct 2 AGACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCG 61 Query 5100 CTCTTGTAGGGACTGGCTTGCCGATATCGGACTCGTTTTTAGCAAATCCCAAATCTGCAC 5159 || | ||||||| |||| || | ||||| | ||||| ||| | ||||| Sbjct 62 TTCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCAC 121 Query 5160 CAAATATGATAATAGATTCCGCTCGGCCAAAGCTGCACAAACCATTGTCTGCTTTTCCCA 5219 |||| ||| ||| |||| | || || ||||||||| | || || |||||||| || Sbjct 122 GAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCA 181 Query 5220 TGCGGTGTTGTGCAGATTCGCCCCCTACATGAGGTACATCGAGTACAAGCTCAAGGAAGT 5279 || ||| | ||||||||||| || ||||| ||||| |||||| | ||| | | ||| | Sbjct 182 CGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGC 241 Query 5280 TCTACCTGAGAAGTACTACATCCACTCGGGGAAAGGACTGGAGGAACTGAATGATTGGGT 5339 | |||||||||| ||||||||| || || || ||||||| || ||||| ||||| Sbjct 242 GTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGT 301 Query 5340 GATTAAGGGGAGGTTTGATGATGTGTGCACTGAGTCGGATTATGAAGCTTTTGATGCAAG 5399 || || | || | | ||| ||||| || || || |||||||| ||||||||| Sbjct 302 CCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATC 361 Query 5400 TCAGGATCAATACATCGTTGCTTTTGAGATTGAGGTTATGCGCTATCTAGGCTTGCCAGC 5459 ||||||||||||||| | |||||||| || | | ||| ||||| || | ||| Sbjct 362 ACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAG 421 Query 5460 AGATTTGATCGCTGATTATCTCTACATCAAGACCCATCTCGGTTCTAAGCTTGGAAATTT 5519 |||||| | || ||| | | || |||||||| |||||||| || || || ||||| Sbjct 422 GGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTT 481 Query 5520 CGCGATTATGAGGTTCTCCGGTGAGGCCAGCACCTTCCTGTTCAACACTATGGCGAATAT 5579 ||||||||||| |||||||| || || || || || || ||||| || | || ||||| Sbjct 482 TGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATAT 541 Query 5580 GCTTTTCACATTCTTGAGGTATGAAATCAAAGGCCGCGAGAGGATATGTTTTGCAGGTGA 5639 ||| ||||| || | | |||||| | | || |||||||| || |||||||| || Sbjct 542 GCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGA 601 Query 5640 TGATATGTGCGCAAACACCAAATTAGTTATTTCGAGAGAGCACGAATGGTTCTTGGGGAA 5699 ||| ||||| || || | | | |||| ||| || ||| | |||||| Sbjct 602 TGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCAGAACATGAAGGTTTCTTGAATTT 661 Query 5700 GCTCAAATTGAAAGCCAAAGTGGAAAACACAAAAAGGCCCACCTTCTGCGGGTGGAACTT 5759 || || | ||||| ||||||| ||| ||| || || || || || |||||| | Sbjct 662 ACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAACCT 721 Query 5760 G-TGCAGTGATGGCATCTACAAGAAGCCACAATTAGTGCTTGAGAGGATG-TGCATAGCT 5817 | || || ||||||| | ||||| || || | | ||||| | |||| ||||| || Sbjct 722 GACGCGGT-ATGGCATTTTTAAGAAACCCCAGCTCATACTTGA-AAGATGCTGCATTGCA 779 Query 5818 AAAGAGACAAACAATCTCCACAATTGTATTGATAATTACGCAATTGAAGTATCTTATGCT 5877 ||||||| || || |||| || ||||||||||| |||||| | ||||| Sbjct 780 AAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGCC 839 Query 5878 TATTTGATGGGAGAGAGAGCTGTGTGCAGGATGAACGAGGAAGAATTGGAAGCATACTAC 5937 || | || ||| |||||||| |||| | ||||||||| ||||||| || | Sbjct 840 TACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGAAGCATTCTTC 899 Query 5938 AATTGCGTGCGAATCATCATTAAGAACAAGCATTTATTAAAATCTGACGTGCGT 5991 || || || ||| |||| ||||| |||||| | |||| ||||| || ||| Sbjct 900 AACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTTCGT 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27382513232280