Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_023892.1 Length=8659 Score E Sequences producing significant alignments: (Bits) Value seq74459 228 4e-56 >seq74459 Length=1629 Score = 228 bits (252), Expect = 4e-56 Identities = 732/1124 (65%), Gaps = 29/1124 (3%) Strand=Plus/Plus Query 5055 AGAGTTTGAGGATaaaaaaaCGAGCAAGAGCGCAGCCACGATTGAGAATCACTCGGGACG 5114 ||| || || ||||| || || || || || |||| ||||| || || | || || Sbjct 2 AGACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCG 61 Query 5115 ATCGTGTAGGGATTGGCTGATAGACATTGGCCTTGTGTTCTCGAAAAGCCAATTATGTAC 5174 || | || |||| || || ||| | || ||| |||| ||||| || || Sbjct 62 TTCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCAC 121 Query 5175 CAAATTCGACAGCCGATTCAGAGTTGCAAAAGCCGCCCAAAGCATAGTTTGCTTCCAACA 5234 ||||| || | ||||| || | ||| || || || ||| ||||| ||||| || Sbjct 122 GAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCA 181 Query 5235 TGAGGTACTTTGCCGGTTCGCACCATACATGAGGTACATCGAGAAGAAACTGCATGAAGT 5294 | || || ||| | |||||||| ||||| ||||| |||||| | || | || | Sbjct 182 CGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGC 241 Query 5295 GCTCCCCGAACGATATTATATCCACTCAGGTAAGGGCCTCGATGAACTCAATGATTGGGT 5354 | | || || | || ||||| |||||||| | || || || ||||| ||||| Sbjct 242 GTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGT 301 Query 5355 CAAGAAGGGCCGATTCAGCGGCATCTGTACCGAGTCAGACTATGAAGCTTTTGACGCGTC 5414 | || ||| || | || || || |||||||||||||| ||||| || || Sbjct 302 CCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATC 361 Query 5415 ACAGGACCAATACATGGTGGCTTTCGAGGTAGAAGTGATGAGGTACTTAGGCCTGCCCAA 5474 |||||| |||||||| ||||||| || | | ||||| ||| | || | || | Sbjct 362 ACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAG 421 Query 5475 TGATTTAATCGAGGATTACAAATTCATCAAGACTCACCTGGGGTCGAAATTGGGCAACTT 5534 ||||| | | || || | || || ||||| ||||| || || ||| |||| || || Sbjct 422 GGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTT 481 Query 5535 CGCTATCATGCGGTTTTCTGGAGAAGCGAGCACTTTCCTATTTAATACTATGGCTAACAT 5594 || || ||| | || || || ||||| || || || || || ||||| | ||||| || Sbjct 482 TGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATAT 541 Query 5595 GCTTTTCACCTTCTTGAAGTATGAAATAAAGGGTCATGAGTTCATATGCTTCGCCGGTGA 5654 ||| ||||| || | |||||||| ||| || | ||| || ||||| || || || Sbjct 542 GCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGA 601 Query 5655 TGATATGTGTGC--CTCAGAGCGTTTGGCGTTGAAAAAGCAGCATGAGTCATTTCTAG-G 5711 ||| |||||||| ||| || | || ||| | || | ||||| ||||| | Sbjct 602 TGACATGTGTGCGAATCAAAGACTGCGG-GTTTCAGCAG-AACATGA-AGGTTTCTTGAA 658 Query 5712 TAAACTCAAATTAAAAGCCAAGGTCTTTATGGTTGACAAACCCACGTTTTGCGGATGGAA 5771 | ||| || ||||||| || || | | || ||||| || ||||| || ||||| Sbjct 659 TTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAA 718 Query 5772 TCTATGCCCAGATGGGATCTACAAAAAACCGCAGCTGGTCATGGAGAGAATGTGCATTGC 5831 || | |||| || | || ||||| ||||| | | || ||| |||||||| Sbjct 719 CCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCATTGC 778 Query 5832 CAAAGAAAAGGCCAACCTCGCCAATTGCATAGATAATTATGCCATTGAGGTATCTTTTGC 5891 ||||| | | || || ||||||| |||||||| |||||||| | | ||| Sbjct 779 AAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGC 838 Query 5892 TTACAAACTCGGGGAGAGA----GCACTGAACCGGATGGATGAGGAGGAAGCAGCTGCCT 5947 ||||| | || ||| || || |||||||||||| ||||| | || | Sbjct 839 CTACAA----GTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGAAGCAT 894 Query 5948 TTTATAACTGCGTGAGGATAATCATCAAAAACAAGCACCTGCTTAAATCTGACATCCGCA 6007 | | ||||| || | || |||| || || ||||| || || || ||||| | || | Sbjct 895 TCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTTCGTA 954 Query 6008 CATTGTACG-AGGAAAATAAG--TTGACTTAGGT------TACTGTCAGTGTGATTGTAT 6058 |||||||| || | ||||| | ||||||| || | | | ||||| | | Sbjct 955 AATTGTACGAAGCATCATAAGGTCTAGCTTAGGTTCGCGCTAGTTTAGTTTTGATTATTT 1014 Query 6059 ATGGATG-TGTTAGTAGA--TTTGTTGAATAAGTATGGTTTTAAGCGTGTGAATAGTGGA 6115 ||||||| ||| ||||| |||||| || | |||||| |||| || | | Sbjct 1015 ATGGATGTTGTGTGTAGAATTTTGTTAGAT---GAAGGTTTTGTTTCTGTGTCTAATCAA 1071 Query 6116 CTAAGTATTCCAATAATTGTGCATTGTGTACCTGGAGCCGGGAA 6159 ||| ||| || ||| ||||| | ||||| ||||| || || || Sbjct 1072 CTAGGTAGGCCCATAGTTGTGAACTGTGTTCCTGGTGCAGGTAA 1115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27567940642376