Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_026248.1 Length=8531 Score E Sequences producing significant alignments: (Bits) Value seq74459 356 1e-94 >seq74459 Length=1629 Score = 356 bits (394), Expect = 1e-94 Identities = 677/983 (69%), Gaps = 19/983 (2%) Strand=Plus/Plus Query 4967 GAATTTGAAGAGAAGAAGCTGAGTAAGAGTGCAGCGACCATTGAGAATCATAGTGGACGG 5026 || || ||||| |||||| || ||||| || | ||||| || ||| ||| || Sbjct 3 GACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGT 62 Query 5027 TCATGTAGGGATTGGCCTATAGATATGGCCATGCTTTTCTCCAAAAGTCAGTTGTGCACA 5086 ||| | || ||||| || ||| | | || ||||| ||| || |||||||| Sbjct 63 TCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACG 122 Query 5087 AAATTTGAGAATCGATTTAGAGTGGCAAAGGCAGCACAAAGCATTGTGTGCTTTCAGCAT 5146 |||||||| ||||||||||| | || ||||| |||||| || ||||||||| || Sbjct 123 AAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCAC 182 Query 5147 GCCGTGCTGTGTCGCTTTGCTCCGTACATGAGGTACATTGAAAAGAAAGTGCATGAAGTC 5206 |||||||| || | || || || ||||| ||||| || || | || || ||| || | Sbjct 183 GCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTA-ATGGAGGC 241 Query 5207 CTCCCCTCT-AGGTTTTACATACATTCAGGTAAGGGGCTTGATGAGCTTAATGATTGGGT 5265 | ||| | ||| ||||| ||| ||||||||| | || ||||||||||| ||||| Sbjct 242 GTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGT 301 Query 5266 CATCCGTGGAAAGTTCGATGGCCTCTGCACAGAGTCTGATTATGAGGCCTTTGATGCCTC 5325 | | ||||| || ||| | || | ||||| || || || ||||| || |||||||| || Sbjct 302 CCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATC 361 Query 5326 CCAAGATGAATTTATAATGGCCTTTGAACTGGAATTGATGAAATTTTTGGGTGTGCCCCA 5385 || ||| ||| || ||||| |||||| | | ||||| | | | |||| | ||| | Sbjct 362 ACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGAT-CCCAA 420 Query 5386 CGGAGTCATAGAG-GACTACAAATTCATTAAGACCAGCTTGGGGTCAAAGTTGGGCAACT 5444 ||| | || ||||| | || ||||||||| | | || ||||| |||| || | Sbjct 421 GGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATT 480 Query 5445 TTGCAATCATGAGATTCTCTGGTGAAGCTAGCACTTTCCTCTTCAACACTTTGGCCAACA 5504 |||| || ||||||||||| || ||||| || || || |||||||| || | || || | Sbjct 481 TTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATA 540 Query 5505 TGCTATTCACTTTTATGCGTTACGACATAAAGGGGAATGAATTTATTTGTTTTGCTGGGG 5564 |||| ||||||||| | || ||| ||| || || || ||||| ||||| || | Sbjct 541 TGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAG 600 Query 5565 ATGACATGTGTGC--TTCAAAGGCCTTATCTGTGGTAAACACC--CACAAG-AGCTTCCT 5619 ||||||||||||| |||||| ||| || || | ||| | || || || Sbjct 601 ATGACATGTGTGCGAATCAAAG------ACTGCGGGTTTCAGCAGAACATGAAGGTTTCT 654 Query 5620 TG-ATAAGCTGAAGTTAAAAGCCAAAGTTCAGGTTACGAGCAAACCAACTTTTTGTGGGT 5678 || || |||||| ||||||| ||||| |||| ||||||||||||||||| | Sbjct 655 TGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCT 714 Query 5679 GGCATCTGTGTCCAGATGGGATTTACAAGAAACCCCAACTCGTTCTCGAGAGGATG-TGC 5737 || | ||| | |||| |||| ||||||||||| ||| | || || | |||| ||| Sbjct 715 GGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGA-AAGATGCTGC 773 Query 5738 ATCGCTATGGAATTGAATAATCTGGCCAACTGCATTGATAATTACTCCATAGAGGTGGGA 5797 || || | || |||| || || | ||||| ||||||||| |||| || | || Sbjct 774 ATTGCAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGG 833 Query 5798 TTTGCTTACAAACTTGGTGAACGGGCAGTGAATAGAATGGATGAAGAAGAGGTAAGTGCA 5857 | ||| ||||| | |||| || ||| | |||||||| ||||| | ||| Sbjct 834 TATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGAAGCA 893 Query 5858 TTCTATAACTGCGTTCGCATCATAGTACGGAATAAACATCTCTTAAAATCGGAGGTCCGT 5917 |||| ||||| ||| || | || |||||| |||||| |||| || || || ||| Sbjct 894 TTCTTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTTCGT 953 Query 5918 TCTGTGTTCGAAGAATCA-AAGG 5939 ||| ||||| |||| |||| Sbjct 954 AAATTGTACGAAGCATCATAAGG 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27158721530440