Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_029086.1 Length=8607 Score E Sequences producing significant alignments: (Bits) Value seq74459 351 5e-93 >seq74459 Length=1629 Score = 351 bits (388), Expect = 5e-93 Identities = 543/771 (70%), Gaps = 6/771 (1%) Strand=Plus/Plus Query 5170 TGCACTAAATTCGAGAAGCGCTTCTGCGAGGCTAAGGCAGGGCAATCCATCGTCTGCTTT 5229 ||||| ||||| || || || || | || |||||||| | ||||| || || |||||| Sbjct 117 TGCACGAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTT 176 Query 5230 CAGCATTCTGTTCTCTGTAGGTTCGCACCTTACATGCGCTACATTGAGTACAAACTGAAT 5289 || | || ||||| || |||||||||||||| | || || ||| | ||| ||| Sbjct 177 TCTCACGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCA-AAAGGTAAT 235 Query 5290 GAAGCCCTT-CCaaaaaaaTACTACGTGCACAGTGGCAGGGGCTTGGAGGAATTGAATGA 5348 | || | || || | || | |||| | || ||||| | ||| |||||||| | ||||| Sbjct 236 GGAGGCGTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGA 295 Query 5349 ATGGGTGTTGAAAGGAGGTTTCAATGGTGTTTGCACTGAGTCAGATTACGAAGCGTTCGA 5408 ||||| | || |||| | ||||||||||| || ||||| || ||||| || || Sbjct 296 GTGGGTCCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGA 355 Query 5409 CGCTTCTCAAGATCAATACATCATGGCCTTCGAGATTGAAGTGATGAAATACCTGGGGCT 5468 || || || ||||||||||||||||| || || || | ||||| | || |||||| | Sbjct 356 TGCATCACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGAT 415 Query 5469 CCCTAGGGACCTAATTGCAGATTACAGGTTCATAAAGACACATCTGGGATCTAAGTTGGG 5528 ||| ||||| | | ||| || | || || ||||| || || || || || |||| Sbjct 416 CCCAAGGGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGG 475 Query 5529 GAACTTTGCCATCATGAGGTTCTCGGGCGAGGCGAGCACTTTTCTATTCAACACCATGGC 5588 ||| ||||| || ||||| ||||| || || || || || ||||| ||||| || | || Sbjct 476 GAATTTTGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGC 535 Query 5589 GAATATGCTCTTCACCTTCATGCGGTATGACTTAAATGGAAGCGAGCACATATGCTTTGC 5648 |||||||||||||| || | ||||||||||| ||||| ||| || |||||||| Sbjct 536 TAATATGCTCTTCACTTTTCTTAAGTATGACTTAAGTGGAAAAGAGAGGATTTGCTTTGC 595 Query 5649 TGGAGACGACATGTGCGCTTCTAGAAGACTTAGGG--TCAGTTCTGAGTATGAAGCTTTC 5706 ||||| |||||||| || | |||||| ||| |||| | || |||||| |||| Sbjct 596 AGGAGATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAG--CAGAACATGAAGGTTTC 653 Query 5707 CTTAGCAAGCTGAAGTTGAAAGCCAAAGTAGATTTTACCGCTAAGCCAACCTTTTGCGGC 5766 | | |||||| | ||||| ||||| | |||||| | || ||||| ||||| ||| Sbjct 654 TTGAATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGC 713 Query 5767 TGGAACCTCACTCCGGATGGCATTTTTAAAAAACCACAATTAGTCTATGAGCGAATGTGC 5826 |||||||| || | | ||||||||||||| ||||| || | | ||| || ||| Sbjct 714 TGGAACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGC 773 Query 5827 GTGGCTAAGGAAACAAATAACTTGGCGCAATGCATAGATAATTACGCCATTGAGGTCTCT 5886 | || || || | ||| | || | ||||| ||||||||||||||||| | Sbjct 774 ATTGCAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGG 833 Query 5887 TTCGCTTACAAGCTGGGGGAAAAGGCTGTGAATAGAATGAGTGAGGAAGAA 5937 | || |||||| || ||| |||||| | ||| |||||||||| Sbjct 834 TATGCCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAA 884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27401695378152