Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_029087.1 Length=8613 Score E Sequences producing significant alignments: (Bits) Value seq74459 300 9e-78 >seq74459 Length=1629 Score = 300 bits (332), Expect = 9e-78 Identities = 581/848 (69%), Gaps = 12/848 (1%) Strand=Plus/Plus Query 5106 AGACTTCGAGGAGAAGAAAACCGCCAAAAGCTCCGCCACAATCGAAAACCACAGTGGCAG 5165 ||||||||| || ||||| || | ||||| | |||| ||| |||||||| |||| | Sbjct 2 AGACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCG 61 Query 5166 ATCTTGTCGTGATTGGCTGGCAGACATTGGACTGATCTTTAGCAAGTCCCAACTGTGTAC 5225 || || || |||| || || || | || | || || ||| |||| || Sbjct 62 TTCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCAC 121 Query 5226 TAAATTTGACAACAGGTTCCGGAGTGCTAAAGCAGCTCAGACTATTGTATGCTTCGCCCA 5285 |||||||| || | || || |||||| || || || | || || ||||| | || Sbjct 122 GAAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCA 181 Query 5286 CTCTGTTCTGTGCCGTTTTGCCCCGTACATGCGCTACATCGAGTATAAGCTGAAGGAGAG 5345 | | || || ||| | || || || ||||| | || |||||| | ||| | | |||| Sbjct 182 CGCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGC 241 Query 5346 CTTACCACCCCAGTATTATGTACATTCAGGGAAGAAATTGGAAGAACTTAGTGCTTGGGT 5405 || || ||| || | ||| || ||| ||||| || |||| || ||||| Sbjct 242 GTTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGT 301 Query 5406 GGTGGATGGGACCTTTGAGGGGGTATGCACGGAATCTGACTACGAGGCCTTCGACGCAAG 5465 | ||| | || | || || ||||||||||| ||||| || || || || ||| Sbjct 302 CCTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATC 361 Query 5466 CCAGGATCAATACATTGTCGCGTTTGAGGTAGCACTTATGAGGTACCTGGGGCTACCACC 5525 |||||||||||||| | || ||||| | || || ||| ||| |||||| | ||| Sbjct 362 ACAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAG 421 Query 5526 AGATTTGGTAAACGACTACATTTATATCAAGACGCACTTGGGCTCTAAATTGGGAAACTT 5585 |||||||| || ||||| |||| ||| ||||| ||| | || || ||| |||| || || Sbjct 422 GGATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTT 481 Query 5586 CGCAATCATGAGATTCTCGGGTGAGGCGAGCACTTTTCTTTTTAATACAATGGCTAATAT 5645 || || ||||||||||| || || || || || ||||| || ||||| | |||||||| Sbjct 482 TGCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATAT 541 Query 5646 GCTATTCACCTTCTTGAGGTATGAGCTTAAG-GGAAGTGAGCGCATATGCTTCGCAGGGG 5704 ||| ||||| || | | |||||| |||||| |||| ||| | || ||||| ||||| | Sbjct 542 GCTCTTCACTTTTCTTAAGTATGA-CTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAG 600 Query 5705 ACGACATGTGTGCTAAT-ACTCGCTTAAAATTGAAACACGAGCACGCGGGATTCTTGGGT 5763 | ||||||||||| ||| | || || | || || || | || |||||| Sbjct 601 ATGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCA-GAACATGAAGGTTTCTTG--- 656 Query 5764 AAGTTA---AAGTTAAAAGCTAAGGTCCAATTCACAGACAAGCCCACTTTCTGCGGGTGG 5820 || ||| ||| |||||||||| || || ||||| || || ||||| || || ||| Sbjct 657 AATTTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGG 716 Query 5821 CACTTGTGTAGTGATGGTATTTACAAGAAACCCCAGCTGGTGTACGAGAGAATGTGCATA 5880 || || | |||| |||| |||||||||||||| | || ||| ||||| Sbjct 717 AACCTGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCATT 776 Query 5881 GCAAAAGAGACCAAT-AATTTGCACAATTGTATTGATAATTATGCTATTGAAGTGGGTTA 5939 |||||||||| ||| | ||| |||| || |||||||| || |||||| | || || Sbjct 777 GCAAAAGAGAGGAATGTGCTAGCA-GATTGCATCGATAATTACGCCATTGAACTTGGGTA 835 Query 5940 TGCTTACA 5947 ||| |||| Sbjct 836 TGCCTACA 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27420877524024