Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_029089.1 Length=8540 Score E Sequences producing significant alignments: (Bits) Value seq74459 284 7e-73 >seq74459 Length=1629 Score = 284 bits (314), Expect = 7e-73 Identities = 643/951 (68%), Gaps = 12/951 (1%) Strand=Plus/Plus Query 4970 GATTTCGAAGAGaaaaaaaCCGCTAAGAGCGCAGCCACAATTGAAAATCATGCGGGCAGA 5029 || |||||||| || || || | || || || |||| ||||||||| ||||| ||| | Sbjct 3 GACTTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGT 62 Query 5030 TCCTGCAGAGACTGGCTGGCAGACATTGGCTTGATCTTCAGCAAATCCCAGCTATGTACT 5089 || |||||||| || |||||| | |||| ||||| || | || || Sbjct 63 TCAAATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACG 122 Query 5090 AAATTCGATAACAGATTCCGCAGTGCTAAAGCGGCGCAAACCATCGTCTGCTTCGCGCAC 5149 ||||| || || |||| | |||||| || || ||| | || || ||||| | ||| Sbjct 123 AAATTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCAC 182 Query 5150 TCCGTACTCTGCCGGTTCGCCCCATACATGCGGTATATAGAGTACAAGCTAAAGGCAGTG 5209 |||| |||||| | ||||| || ||||| ||||||| ||| | ||| ||| || | | Sbjct 183 GCCGTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTAATGGAGGCG 242 Query 5210 CTTCCGGACAGATTCTATGTGCACTCAGGTAAGAAGTTGGAGGATCTATGCGAGTGGGTG 5269 | || || | ||||| | || |||||| ||||||||| || |||||||| Sbjct 243 TTGCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTC 302 Query 5270 AAGAGAGGTGAATTTGAGGGCCTCTGCACGGAATCTGACTATGAGGCCTTCGATGCCAGC 5329 | ||| | || | || | ||||||||||| |||||||| || || ||||| Sbjct 303 CTTCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCA 362 Query 5330 CAGGATCAGTATATCGTTGCCTTCGAGGTGAGTCTGATGCGCTACCTGGGTCTGCCCGCA 5389 |||||||| || ||| | || || || | |||||| || ||||| | || Sbjct 363 CAGGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGG 422 Query 5390 GACTTGATCAATGATTATGTGTACATCAAAACGCATCTGGGTTCAAAACTGGGAAACTTT 5449 || ||| | || || ||| | | || || || || || |||||||||||||| || ||| Sbjct 423 GATTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTT 482 Query 5450 GCTATAATGAGATTCTCTGGAGAGGCTAGCACCTTCCTATTCAACACTATGGCTAACATG 5509 || || ||||||||||| || || || || || || || ||||| || | ||||| ||| Sbjct 483 GCGATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATG 542 Query 5510 CTCTTTACATTCTTGAGGTATGAGCTTAA-AGGGTCCGAGAGGATATGCTTCGCTGGTGA 5568 ||||| || || | | |||||| ||||| || |||||||| ||||| || || || Sbjct 543 CTCTTCACTTTTCTTAAGTATGA-CTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGA 601 Query 5569 TGATATGTGCGCGAA-CTCGCGTTTAGTGGTGAAGAAGGAGCACGAGGGCTTTCTAGCA- 5626 ||| ||||| ||||| | | | | | || | || || || || ||||| | | Sbjct 602 TGACATGTGTGCGAATCAAAGACTGCGGGTTTCAGCA-GAACATGAAGG-TTTCTTGAAT 659 Query 5627 AAATTGAAATTAAAAGCTAAGGTCATGGTCACGACCAAGCCGACTTTCTGCGGTTGGCAC 5686 | |||| |||||||||| || | || || || ||||| || || ||| || Sbjct 660 TTACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAAC 719 Query 5687 CTTTGCGCAG-ACGGGATATACAAAAAACCCCAACTTGTATTTGAAAGGATG-TGCATCG 5744 | | ||| | | || || | || |||||||| || || |||||| |||| ||||| | Sbjct 720 C-TGACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAA-GATGCTGCATTG 777 Query 5745 CTAAAGAGACGAATAACCTCCACAACTGCATCGATAATTATGCGATAGAGGTGGGGTATG 5804 | ||||||| |||| || | |||||||||||||| || || || | ||||||| Sbjct 778 CAAAAGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATG 837 Query 5805 CATACCGATTGGGCGAGAGGGCTGTTGGGCGGATGGATGAGGAAG-AGCTCGAGTCTTAC 5863 | ||| ||| || ||||| | |||||||||||||| |||| || | | | Sbjct 838 CCTACAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCT-GAAGCATTC 896 Query 5864 TACAATTGCGTACGAGTCATAATAAAGAATCGGCACTTACTAAAATCCGAT 5914 | ||| || || | | | ||||||||| ||| | ||||| || ||| Sbjct 897 TTCAACTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGAT 947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27187494749248