Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_031089.1 Length=8525 Score E Sequences producing significant alignments: (Bits) Value seq74459 394 5e-106 >seq74459 Length=1629 Score = 394 bits (436), Expect = 5e-106 Identities = 661/949 (70%), Gaps = 8/949 (1%) Strand=Plus/Plus Query 5003 TTTGAGGATAAAAAGACTAGTAAAAGTGCTGCAACTATTGAAAATCATTCGAACCGTTCT 5062 || || ||||| |||||| ||||||||||| | |||||||| ||| | |||||| Sbjct 6 TTCGAAGATAAGAAGACTTCAAAAAGTGCTGCCATAATTGAAAACCATGCTGGCCGTTCA 65 Query 5063 TGCCGGGATTGGCTTATTGATATCGGTCTGATCTTCTCCAAAAGCCAGCTTTGTACCAAA 5122 | || |||| || ||| || || | ||| ||| || | || || ||| Sbjct 66 AATCAAGACTGGCCAATCGATCAAGGCTTGGTTTTCATGAAATCACAATTGTGCACGAAA 125 Query 5123 TTTGATAATCGGTTTCGCGTTGCCAAAGCAGCGCAGAGTATCGTTTGCTTTCAGCACGAG 5182 ||||| ||||| ||| | | ||| || || || || || || |||||| |||| Sbjct 126 TTTGAAAATCGATTTAGGGATGCTAAGGCTGCACAATCGATAGTGTGCTTTTCTCACGCC 185 Query 5183 GTACTTTGTAGATTTGCGCCCTACATGAGATACATTGAAATGAAGCTGCATGAAGTACTA 5242 || || || ||||| || || ||||| || || || || ||| | ||| || | Sbjct 186 GTGCTCTGCAGATTCGCACCTTACATCAGGTATATCGAGCAAAAGGTA-ATGGAGGCGTT 244 Query 5243 CCCAGT-AATTATTACATCCATTCAGGTAAGGGACTTGAAGAGCTGAACGATTGGGTTCT 5301 || | || | ||||||||| |||||||| | || ||||| || || ||||| || Sbjct 245 GCCTGAGAAGTTCTACATCCATAGTGGTAAGGGGTTGGAGGAGCTTAATGAGTGGGTCCT 304 Query 5302 TAGAGGGAAATTTGAAGGTGTTTGCACGGAGTCAGATTATGAAGCCTTTGATGCCTCGCA 5361 | | || || || |||||||||||||||| ||||| |||||||| |||||||| || || Sbjct 305 TCGTGGTAATTTCCAAGGTGTTTGCACGGAATCAGACTATGAAGCATTTGATGCATCACA 364 Query 5362 AGATCAATACATCGTTGCATTTGAAATGGCTGTAATGAAGTACTTGGGACTACCACAATC 5421 |||||||||||| | || |||||||| || | ||| |||| |||| | ||| Sbjct 365 GGATCAATACATCATGGCTTTTGAAATCGCCCTGATGGAGTATCTGGGGATCCCAAGGGA 424 Query 5422 ATTGATCAATGACTATGTGTTCATCAAGACCCATTTGGGTTCTAAGCTTGGTAATTTTGC 5481 ||| | || |||||| | || || |||||||| | ||||| || || || |||||||| Sbjct 425 TTTGGTGAAAGACTATATTTTTATTAAGACCCACCTCGGTTCAAAACTGGGGAATTTTGC 484 Query 5482 AATTATGAGGTTTTCAGGTGAAGCAAGTACTTTTCTCTTCAATACAATGGCCAACATGCT 5541 |||||||| || || || ||||||||||| |||||||||||||| | || || ||||| Sbjct 485 GATTATGAGATTCTCCGGGGAAGCAAGTACATTTCTCTTCAATACGCTCGCTAATATGCT 544 Query 5542 CTTCACATTTTTGAGATACGAGATTAAG-GGCAATGAATTCATATGTTTTGCAGGGGATG 5600 |||||| ||| | | || || ||||| || || || || || |||||||| |||| Sbjct 545 CTTCACTTTTCTTAAGTATGA-CTTAAGTGGAAAAGAGAGGATTTGCTTTGCAGGAGATG 603 Query 5601 ACATGTGTGC--ATCGAGGCGCCTGCCAATCAAGAAAGAGCACGACGGATTTCTGAGCAA 5658 |||||||||| ||| | | |||| | ||| || || || || ||| Sbjct 604 ACATGTGTGCGAATCAA--AGACTGCGGGTTTCAGCAGAACATGAAGGTTTCTTGAATTT 661 Query 5659 GCTGAAGCTGAAAGCGAAAGTTGCTTTCACAAATAAGCCAACTTTTTGCGGGTGGAACTT 5718 |||||||| ||||| ||||| | ||| ||| | || ||||||||||| || |||||| | Sbjct 662 ACTGAAGCTAAAAGCTAAAGTGGGTTTTACAGAAAAACCAACTTTTTGTGGCTGGAACCT 721 Query 5719 AACACCAGATGGTATCTACAAGAAACCGCAGTTGGTGATGGAGAGAATGTGCATTGCTAA 5778 || | |||| || | |||||||| ||| | | | || ||| |||||||| || Sbjct 722 GACGCGGTATGGCATTTTTAAGAAACCCCAGCTCATACTTGAAAGATGCTGCATTGCAAA 781 Query 5779 GGAGACGAATAATCTTGCAAATTGTATCGACAATTATGCCATTGAGGTCTCTTACGCATA 5838 |||| |||| || ||| |||| ||||| ||||| |||||||| | || || || Sbjct 782 AGAGAGGAATGTGCTAGCAGATTGCATCGATAATTACGCCATTGAACTTGGGTATGCCTA 841 Query 5839 TCGGTTGGGTGAAAAAGCATTGAATCGAATGGATGAAGAGGAAGCAGCTGCAATGTACAA 5898 |||| ||| || || | |||||||| || ||||| | ||| | | ||| Sbjct 842 CAAGTTGAAAGAACTCGCTGTGTGTGAGATGGATGAGGAAGAAGCTGAAGCATTCTTCAA 901 Query 5899 TTGTGTGAGGATAATCATTAAGAATAAGCACCTGCTCAAGTCCGATGTT 5947 ||||| | || |||| ||||||||||| || || ||||| |||||| Sbjct 902 CTGTGTTAAAATTGTCATAAAGAATAAGCATCTCCTAAAGTCTGATGTT 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27139539384568