Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19]
59,587 sequences; 511,738,253 total letters
Query= NC_028236.1
Length=11072
Score E
Sequences producing significant alignments: (Bits) Value
seq1383 178 9e-41
seq283 102 6e-18
>seq1383
Length=104272
Score = 178 bits (196), Expect = 9e-41
Identities = 296/425 (70%), Gaps = 7/425 (2%)
Strand=Plus/Plus
Query 6215 GATGATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTC 6274
|| || ||| | |||||||||| | ||||| |||||||| ||| | |||||||||
Sbjct 8300 GAAGAGCTGGTAATCGGATTAAGAGCCAAGGAAAGAGAAGTAAAAATCTCGGGAAGATTC 8359
Query 6275 TTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAG 6334
|| || ||||||| ||| | || ||||| || || || | || |||||| |||| ||
Sbjct 8360 TTCTCTTTGATGTCGTGGGAACTCAGAGAATACTTTGTCATCACAGAGTACCTGATCAAA 8419
Query 6335 GAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATA 6394
|| |||| || || | || || || | |||||||| || ||||||| || || ||
Sbjct 8420 GAATATTATGTACCACTTTTCAAAGGCTTAACAATGGCGGACAACATGACCACCGTGATC 8479
Query 6395 TCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATT 6454
||| |||| ||||| | | ||| || ||| | ||| || || |||||| |||
Sbjct 8480 AAGAAGATGATAGATAGCTCCCTGGGACAGGGATTAACTGACTACTCCCAAATCGCAATT 8539
Query 6455 GCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCA 6514
|| || || || |||||||| || |||||||||||||||||| | || | || | ||
Sbjct 8540 GCCAACCACATCGATTATGAAAAATGGAACAATCACCAAAGATATGACTCAACAGCCCCT 8599
Query 6515 GTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCC--CAATTTAATATACCGGACACATG 6572
|| |||| || ||||| | ||||| || | || || ||| | | || ||||||
Sbjct 8600 GTATTCACTGTGATGGGGAAATTTTTTGGATTACCAGCACTTT--TTTCTCGTACACATC 8657
Query 6573 AATTCTTTGAAAATAGCTGGATATACTACAATGGGAGACCTGACCTGATGACTGTCAGGG 6632
| || ||| | | || | | || ||||||| ||||| ||| | |||| |||| |
Sbjct 8658 AGTTTTTTAAGGAAAGTTTAGTTTATTACAATGAAAGACCCGACTTAATGA---TCAGTG 8714
Query 6633 ATGGA 6637
|||||
Sbjct 8715 ATGGA 8719
Score = 114 bits (126), Expect = 9e-22
Identities = 174/248 (70%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 6248 AGAGAAGTCAAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTAT 6307
|||||||||||| || ||| |||| || || || | ||||||| | || | |||||
Sbjct 37913 AGAGAAGTCAAAATATCTGGACGATTTTTCTCGCTTAGGTCTTGGGAACTACGTGAGTAC 37972
Query 6308 TTCGTGGTGACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACA 6367
|| ||| | ||||| || | || || || | || || || | ||||| ||| | ||
Sbjct 37973 TTTGTGATCACGGAATATCTAATCAAAGAATACTATGTACCGCTGTTTAAAGGGTTAACT 38032
Query 6368 ATGGCTGATGACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCAAGGA 6427
||||| || | ||||| || || || || |||| || ||| | | ||| ||| |
Sbjct 38033 ATGGCCGACAATATGACCACTGTCATCAAGAAAATGATTGACAGATCTCTGGGACAATGC 38092
Query 6428 GGGAGTGATTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAAT 6487
| || ||||| |||||| || ||||| ||||| || |||||||||||||||||
Sbjct 38093 CTCACGGACTATTCACAAATCACAATCGCAAACCATATCGACTATGAGAAGTGGAACAAC 38152
Query 6488 CACCAAAG 6495
|| |||||
Sbjct 38153 CATCAAAG 38160
>seq283
Length=322283
Score = 102 bits (112), Expect = 6e-18
Identities = 253/379 (67%), Gaps = 4/379 (1%)
Strand=Plus/Plus
Query 6218 GATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTT 6277
|| || || || |||| || || || || |||||| ||| | | || | |||| | |
Sbjct 271942 GAACTAATAATATGATTGAAAGGGAAAGAAAGAGAAATCAGAAAGACAG-ACGATT-TCT 271999
Query 6278 TCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAG 6337
|| || ||||||||| |||| || |||||||| | || ||||| | || ||| |
Sbjct 272000 TCTCTT-TGTCTTGGACCTTGAGGGAATATTTCGTAATTACCGAGTATCTCATTAAGATG 272058
Query 6338 CATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCC 6397
| || |||||| | || ||| || || || |||||||||||| ||||| ||
Sbjct 272059 GAGTATGTTCCTCTCTTCCATGTTTTGCCA-TGAAAGATGACATGACATCAGTTGTAAAG 272117
Query 6398 AAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATTGCA 6457
|| ||||||| || || || |||||| | | || || | | |||||
Sbjct 272118 AAAATGATGGACAGTACCATAGGACAAGGACTAGATAACTACAAGCATGTTGGAATTGCT 272177
Query 6458 AATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTT 6517
|| || || ||||| || || ||||| || || ||||||| | || | | |||||
Sbjct 272178 AACCACATCGATTACGAAAATTGGAATAAACATCAAAGAATTAAAGCTAATAAACCAGTG 272237
Query 6518 TTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTC 6577
||||| || |||||| | || || || | | ||| | | |||| ||| |||||||||
Sbjct 272238 TTCAATGTAATGGGTAAATTCTTTGGATTGGCTAATCTGTTCTACCAGACCCATGAATTC 272297
Query 6578 TTTGAAAATAGCTGGATAT 6596
|| || | |||| ||||
Sbjct 272298 TTCCAACAAAGCTTTATAT 272316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35291526323248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |