Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq1383 178 9e-41 seq283 102 6e-18 >seq1383 Length=104272 Score = 178 bits (196), Expect = 9e-41 Identities = 296/425 (70%), Gaps = 7/425 (2%) Strand=Plus/Plus Query 6215 GATGATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTC 6274 || || ||| | |||||||||| | ||||| |||||||| ||| | ||||||||| Sbjct 8300 GAAGAGCTGGTAATCGGATTAAGAGCCAAGGAAAGAGAAGTAAAAATCTCGGGAAGATTC 8359 Query 6275 TTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAG 6334 || || ||||||| ||| | || ||||| || || || | || |||||| |||| || Sbjct 8360 TTCTCTTTGATGTCGTGGGAACTCAGAGAATACTTTGTCATCACAGAGTACCTGATCAAA 8419 Query 6335 GAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATA 6394 || |||| || || | || || || | |||||||| || ||||||| || || || Sbjct 8420 GAATATTATGTACCACTTTTCAAAGGCTTAACAATGGCGGACAACATGACCACCGTGATC 8479 Query 6395 TCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATT 6454 ||| |||| ||||| | | ||| || ||| | ||| || || |||||| ||| Sbjct 8480 AAGAAGATGATAGATAGCTCCCTGGGACAGGGATTAACTGACTACTCCCAAATCGCAATT 8539 Query 6455 GCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCA 6514 || || || || |||||||| || |||||||||||||||||| | || | || | || Sbjct 8540 GCCAACCACATCGATTATGAAAAATGGAACAATCACCAAAGATATGACTCAACAGCCCCT 8599 Query 6515 GTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCC--CAATTTAATATACCGGACACATG 6572 || |||| || ||||| | ||||| || | || || ||| | | || |||||| Sbjct 8600 GTATTCACTGTGATGGGGAAATTTTTTGGATTACCAGCACTTT--TTTCTCGTACACATC 8657 Query 6573 AATTCTTTGAAAATAGCTGGATATACTACAATGGGAGACCTGACCTGATGACTGTCAGGG 6632 | || ||| | | || | | || ||||||| ||||| ||| | |||| |||| | Sbjct 8658 AGTTTTTTAAGGAAAGTTTAGTTTATTACAATGAAAGACCCGACTTAATGA---TCAGTG 8714 Query 6633 ATGGA 6637 ||||| Sbjct 8715 ATGGA 8719 Score = 114 bits (126), Expect = 9e-22 Identities = 174/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 6248 AGAGAAGTCAAAGTAAAAGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTAT 6307 |||||||||||| || ||| |||| || || || | ||||||| | || | ||||| Sbjct 37913 AGAGAAGTCAAAATATCTGGACGATTTTTCTCGCTTAGGTCTTGGGAACTACGTGAGTAC 37972 Query 6308 TTCGTGGTGACGGAGTACTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACA 6367 || ||| | ||||| || | || || || | || || || | ||||| ||| | || Sbjct 37973 TTTGTGATCACGGAATATCTAATCAAAGAATACTATGTACCGCTGTTTAAAGGGTTAACT 38032 Query 6368 ATGGCTGATGACATGACAACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCAAGGA 6427 ||||| || | ||||| || || || || |||| || ||| | | ||| ||| | Sbjct 38033 ATGGCCGACAATATGACCACTGTCATCAAGAAAATGATTGACAGATCTCTGGGACAATGC 38092 Query 6428 GGGAGTGATTATTCTCAAATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAAT 6487 | || ||||| |||||| || ||||| ||||| || ||||||||||||||||| Sbjct 38093 CTCACGGACTATTCACAAATCACAATCGCAAACCATATCGACTATGAGAAGTGGAACAAC 38152 Query 6488 CACCAAAG 6495 || ||||| Sbjct 38153 CATCAAAG 38160 >seq283 Length=322283 Score = 102 bits (112), Expect = 6e-18 Identities = 253/379 (67%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 6218 GATCTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTT 6277 || || || || |||| || || || || |||||| ||| | | || | |||| | | Sbjct 271942 GAACTAATAATATGATTGAAAGGGAAAGAAAGAGAAATCAGAAAGACAG-ACGATT-TCT 271999 Query 6278 TCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAG 6337 || || ||||||||| |||| || |||||||| | || ||||| | || ||| | Sbjct 272000 TCTCTT-TGTCTTGGACCTTGAGGGAATATTTCGTAATTACCGAGTATCTCATTAAGATG 272058 Query 6338 CATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCC 6397 | || |||||| | || ||| || || || |||||||||||| ||||| || Sbjct 272059 GAGTATGTTCCTCTCTTCCATGTTTTGCCA-TGAAAGATGACATGACATCAGTTGTAAAG 272117 Query 6398 AAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCAAATCTGTATTGCA 6457 || ||||||| || || || |||||| | | || || | | ||||| Sbjct 272118 AAAATGATGGACAGTACCATAGGACAAGGACTAGATAACTACAAGCATGTTGGAATTGCT 272177 Query 6458 AATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTT 6517 || || || ||||| || || ||||| || || ||||||| | || | | ||||| Sbjct 272178 AACCACATCGATTACGAAAATTGGAATAAACATCAAAGAATTAAAGCTAATAAACCAGTG 272237 Query 6518 TTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATATACCGGACACATGAATTC 6577 ||||| || |||||| | || || || | | ||| | | |||| ||| ||||||||| Sbjct 272238 TTCAATGTAATGGGTAAATTCTTTGGATTGGCTAATCTGTTCTACCAGACCCATGAATTC 272297 Query 6578 TTTGAAAATAGCTGGATAT 6596 || || | |||| |||| Sbjct 272298 TTCCAACAAAGCTTTATAT 272316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35291526323248