Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq1383 159 2e-35 >seq1383 Length=104272 Score = 159 bits (176), Expect = 2e-35 Identities = 406/613 (66%), Gaps = 10/613 (2%) Strand=Plus/Plus Query 6156 GAAGATTTGGTGATTGGTCTCAAAGGAAAAGAGAGAGAATTGAAACTAGCCGGAAGATTC 6215 ||||| |||| || || | | || || || |||||| | ||| | | ||||||||| Sbjct 8300 GAAGAGCTGGTAATCGGATTAAGAGCCAAGGAAAGAGAAGTAAAAATCTCGGGAAGATTC 8359 Query 6216 TTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATATCTTATCAAA 6275 || || |||||||| ||| || | | ||||| ||||| ||||| || || || |||||| Sbjct 8360 TTCTCTTTGATGTCGTGGGAACTCAGAGAATACTTTGTCATCACAGAGTACCTGATCAAA 8419 Query 6276 ACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACTGCTGTCATC 6335 | | | ||| || | ||||| || |||| ||||| || | | || | || ||| Sbjct 8420 GAATATTATGTACCACTTTTCAAAGGCTTAACAATGGCGGACAACATGACCACCGTGATC 8479 Query 6336 aaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGGACAATTACGAGTCC---ATTTGT 6392 || || ||| | |||| ||| || || ||||| | | || | ||| || Sbjct 8480 AAGAAGATGATAGATAGCTCCCTGGGACAGGGATT---AACTGACTACTCCCAAATCGCA 8536 Query 6393 ATCGCGAATCACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGAATCCAATGGG 6452 || || || ||||| |||||||| ||||||||||| || ||| | | || || | | Sbjct 8537 ATTGCCAACCACATCGATTATGAAAAATGGAACAATCACCAAAGATATGACTCAACAGCC 8596 Query 6453 CCTGTATTTCGTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAGGACACAC 6512 |||||||| ||||||||| | || | |||| ||| || || | ||||| Sbjct 8597 CCTGTATTCACTGTGATGGGGAAATTTTTTGGATTACCAGCACTTTTTTCTCGTACACAT 8656 Query 6513 GAATTCTTCGAGAAGAGCTTGATCTACTATAATGGACGTCCAGACTTAATG--CAGGTCT 6570 | || || || | || || | || || |||| | | || ||||||||| ||| | Sbjct 8657 CAGTTTTTTAAGGAAAGTTTAGTTTATTACAATGAAAGACCCGACTTAATGATCAGTGAT 8716 Query 6571 CGGGAAATACCCTCATCAACAGGTCTAATCAATTGGTCTGCTGGCAGGGACAAGCAGGAG 6630 | |||| | | || | ||| || | | |||||| ||| | ||||| ||||| Sbjct 8717 GGAGAAACATTATACTCGA-AGGAAGGAT-ATTGGGTCTGTTGGAATGGACAGCTAGGAG 8774 Query 6631 GGCTGGAAGGCCTTCGTCAGAAAGGATGGAGCATCCTGAACTTGCTAGTAATCCAAAGAG 6690 |||| ||||| || | ||| | || ||||| || | ||| | |||||| | | |||| Sbjct 8775 GGCTCGAAGGACTCAGACAGTACGGGTGGAGTATATTAAACCTCCTAGTACTAGAGAGAG 8834 Query 6691 AAGCTAAAGTCCGAAACACAGCAGTCAAGGTGTTGGCACAAGGGGATAATCAAGTGATTT 6750 || |||| | || || || ||| || ||||| ||||| || || || || || | Sbjct 8835 AATGTAAAATACGTAATACCCGAGTGAACACATTGGCTCAAGGAGACAACCAGGTTATAT 8894 Query 6751 GCACTCAATACAA 6763 | ||||| || || Sbjct 8895 GTACTCACTATAA 8907 Score = 159 bits (176), Expect = 2e-35 Identities = 221/308 (72%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 6133 TAGACAAGTATGGACTAGACGATGAAGATTTGGTGATTGGTCTCAAAGGAAAAGAGAGAG 6192 ||||||| |||||||| | | ||||| | || || || || | || ||| || | | Sbjct 21074 TAGACAAAAATGGACTAACCCAGGAAGAACTTGTAATCGGACTAAGAGCAAAGGAAAAGG 21133 Query 6193 AATTGAAACTAGCCGGAAGATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTG 6252 || | ||| || | ||| |||| || || | ||||||||| || ||||| | || |||| Sbjct 21134 AAGTCAAAATATCTGGACGATTTTTCTCGCTTATGTCTTGGGAACTACGTAAGTACTTTG 21193 Query 6253 TAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTCAAGGGACTAACCATGG 6312 | |||||||||||||| |||||| | ||| ||| || |||| || || |||| |||| Sbjct 21194 TGATCACGGAATATCTAATCAAAGAATACTATGTACCGCTGTTTAAAGGGTTAACTATGG 21253 Query 6313 CAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGG 6372 |||| || | ||| | || || || |||||| | || | || || |||||| | Sbjct 21254 CAGACAATATGACTACAGTTATAAAGAAAATGATAGACAGTTCTCTAGAACAAGGACT-- 21311 Query 6373 ACAATTACGAGTCC---ATTTGTATCGCGAATCACATTGATTATGAGAAATGGAACAACC 6429 || | || | ||| || ||||| ||||||||||| |||||||||||||| |||| Sbjct 21312 -CACTGACTACTCCCAGATCACAATCGCAAATCACATTGACTATGAGAAATGGAATAACC 21370 Query 6430 ATCAACGC 6437 ||||| || Sbjct 21371 ATCAAAGC 21378 Score = 134 bits (148), Expect = 1e-27 Identities = 184/254 (72%), Gaps = 10/254 (4%) Strand=Plus/Plus Query 6189 AGAGAATTGAAACTAGCCGGAAGATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATAT 6248 |||||| | ||| || | ||| |||| || || | | ||||||| || ||||||| || Sbjct 37913 AGAGAAGTCAAAATATCTGGACGATTTTTCTCGCTTAGGTCTTGGGAACTACGTGAGTAC 37972 Query 6249 TTTGTAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTCAAGGGACTAACC 6308 ||||| |||||||||||||| |||||| | ||| ||| || |||| || || |||| Sbjct 37973 TTTGTGATCACGGAATATCTAATCAAAGAATACTATGTACCGCTGTTTAAAGGGTTAACT 38032 Query 6309 ATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGTCAAGGA 6368 ||||| || || | || |||||||||| |||||| | || | ||| || ||| | Sbjct 38033 ATGGCCGACAATATGACCACTGTCATCAAGAAAATGATTGACAGATCTCTGGGACAATGC 38092 Query 6369 TT---GGACAATT-ACGAGTC-CATTTGTATCGCGAATCACATTGATTATGAGAAATGGA 6423 | |||| ||| || | || || ||||| || || || || |||||||| |||| Sbjct 38093 CTCACGGACTATTCACAAATCACA-----ATCGCAAACCATATCGACTATGAGAAGTGGA 38147 Query 6424 ACAACCATCAACGC 6437 ||||||||||| || Sbjct 38148 ACAACCATCAAAGC 38161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35070874337356