Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_031079.1 Length=11843 Score E Sequences producing significant alignments: (Bits) Value seq283 87.8 1e-13 seq1383 80.6 2e-11 >seq283 Length=322283 Score = 87.8 bits (96), Expect = 1e-13 Identities = 235/352 (67%), Gaps = 8/352 (2%) Strand=Plus/Plus Query 6781 TTGAAGGGGAAGGAAAGGGAGATCAAGAAGAATGGGAGGTTCTTCGCACTCATGTCCTGG 6840 ||||| ||||| ||||| || |||| |||| | |||||| | | ||| ||| Sbjct 271957 TTGAAAGGGAAAGAAAGAGAAATCAGAAAGACAGACGATTTCTTCTCTTT---GTCTTGG 272013 Query 6841 GACCTTC-GGGAGTACTTTGTATCCACTGAATATCTTATTAAAATGTTCTATGTCCCTTT 6899 ||||| |||| || || ||| || || ||||| ||||| ||| ||||| ||| | Sbjct 272014 -ACCTTGAGGGAATATTTCGTAATTACCGAGTATCTCATTAAGATGGAGTATGTTCCTCT 272072 Query 6900 GTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAGATCCTTGGGTG 6959 ||||| | | || ||||| ||||| ||| || || || || || | | | Sbjct 272073 CTTCCATGTTTTG-CCATGAAAGATGACATGACATCAGTTGTAAAGAAAATGATGGACAG 272131 Query 6960 CACCTTCGGTCAAGGGCTTGCAGGGTACACTGCA-GTTACATTCACTAACCACCTAGATT 7018 ||| | || ||||| || | |||| ||| ||| | | |||||||| | |||| Sbjct 272132 TACCATAGGACAAGGACTAGATAACTACAA-GCATGTTGGAATTGCTAACCACATCGATT 272190 Query 7019 ACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGGTTTTCAGAGTGATGG 7078 ||||||| ||||| || ||||| || | || | | | || || |||| || |||| Sbjct 272191 ACGAAAATTGGAATAAACATCAAAGAATTAAAGCTAATAAACCAGTGTTCAATGTAATGG 272250 Query 7079 GTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGTTCTTCCA 7130 || | ||||||||| | || | ||||| || ||||| || |||||||| Sbjct 272251 GTAAATTCTTTGGATTGGCTAATCTGTTCTACCAGACCCATGAATTCTTCCA 272302 Score = 87.8 bits (96), Expect = 1e-13 Identities = 195/287 (68%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 6889 TATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAG 6948 ||||||||| | ||||| ||| |||||||||| ||||| ||| || || || || Sbjct 273421 TATGTCCCTCTCTTCCATGGTTTGACCATGGCAGATGACATGACATCAGTTGTAAAGAAA 273480 Query 6949 ATCCTTGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTAC-ACT-GCAG-TTACATTCACT 7005 || | || | ||| | || ||||| || ||| || || |||| || | | || Sbjct 273481 ATGATGGGCAGTACCATAGGACAAGGACT---AGGTAACTACGAGCAGGTTGGAATTGCT 273537 Query 7006 AACCACCTAGATTACGAAAAGTGGA-ACAACCATCAGAGGCGGGAGGCCACTGACCCGGT 7064 |||||| | ||||||||||| | || | || | |||||| || | | ||| || || Sbjct 273538 AACCACATCGATTACGAAAAATAGATAAAATCTGCAGAGGATTGAATCTAATGAACCAGT 273597 Query 7065 TTTCAGAGTGATGGGTCAGTTCTTTGGACTTCCTGAGCTGTTTGTCCGCACCCACGAGTT 7124 |||| ||| |||||||| | |||| || | | | ||||| || ||| | || || Sbjct 273598 GTTCAAAGTAATGGGTCAATCCTTTAGATTGGTTAACCTGTTCTGCCAGACCAATGAATT 273657 Query 7125 CTTCCAGAAGAGTCTGATCTATTACGGAGAAAGACCAGACCTGATGC 7171 |||||| | || | || || ||| ||| || ||||||| |||| Sbjct 273658 CTTCCAACAAAGCTTTATATACTACAAAGAGAGGACAGACCTAATGC 273704 Score = 82.4 bits (90), Expect = 6e-12 Identities = 146/207 (71%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 6889 TATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTCACCAAAAAG 6948 ||||||||| | ||||| ||| |||||||||| ||||| |||| || || ||||| Sbjct 292274 TATGTCCCTCTCTTCCATGGTTTGACCATGGCAGATGACATGAAATCAGTTGTAAAAAA- 292332 Query 6949 ATCCTTGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTAC-ACT-GCA-GTTACATTCACT 7005 || | || | ||| || ||||| || ||| || || ||| ||| | | || Sbjct 292333 ATGATGGGCAGTACCACAGGACAAGGACT---AGGTAACTACGAGCATGTTGGAATTGCT 292389 Query 7006 AACCACCTAGATTACGAAAAGTGGAACAACCATCAGAGGCGGGAGGCCACTGACCCGGTT 7065 |||||| | ||||||||||| |||||||| | |||||| | | | ||| || || Sbjct 292390 AACCACATCGATTACGAAAAATGGAACAATCTGCAGAGGATTTAATCTAATGAACCAGTG 292449 Query 7066 TTCAGAGTGATGGGTCAGTTCTTTGGA 7092 |||| ||| |||||||| | |||| || Sbjct 292450 TTCAAAGTAATGGGTCAATCCTTTAGA 292476 >seq1383 Length=104272 Score = 80.6 bits (88), Expect = 2e-11 Identities = 152/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 6820 TTCTTCGCACTCATGTCCTGGGACCTTCGGGAGTACTTTGTATCCACTGAATATCTTATT 6879 || ||| | || | ||| ||||| || || ||||||||||| ||| |||||||| || Sbjct 37937 TTTTTCTCGCTTAGGTCTTGGGAACTACGTGAGTACTTTGTGATCACGGAATATCTAATC 37996 Query 6880 AAAATGTTCTATGTCCCTTTGTTCCAAGGTCTGACCATGGCGGATGATCTGAACTCTGTC 6939 ||| | |||||| || |||| |||| | || ||||| || || ||| | ||||| Sbjct 37997 AAAGAATACTATGTACCGCTGTTTAAAGGGTTAACTATGGCCGACAATATGACCACTGTC 38056 Query 6940 ACCAAAAAGATCCTTGGGTGCACCTTCGGTCAAGGGCTTGCAGGGTACACTGCAGTTACA 6999 | ||| || || ||| | | | || ||| | || | | || | | | ||| Sbjct 38057 ATCAAGAAAATGATTGACAGATCTCTGGGACAATGCCTCACGGACTATTCACAAATCACA 38116 Query 7000 TTCACTAACCACCTAGATTACGAAAAGTGGAACAACCATCAGAG 7043 || | ||||| | || || || ||||||||||||||||| || Sbjct 38117 ATCGCAAACCATATCGACTATGAGAAGTGGAACAACCATCAAAG 38160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37757072426476