Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq1383 104 1e-18 seq283 80.6 1e-11 >seq1383 Length=104272 Score = 104 bits (114), Expect = 1e-18 Identities = 394/610 (65%), Gaps = 14/610 (2%) Strand=Plus/Plus Query 3669 ATTGGATTAAAGGGCAAGGAGCGAGAGTTAAAAGACGTGGGAAGATTTTTCTCTCTGATG 3728 || ||||||| | |||||| |||| ||||| | ||||||||| |||||| ||||| Sbjct 8312 ATCGGATTAAGAGCCAAGGAAAGAGAAGTAAAAATCTCGGGAAGATTCTTCTCTTTGATG 8371 Query 3729 ACCTGGGATCTGAGAGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTT 3788 | ||||| || ||||| || ||||| ||| |||||||| || || |||||||| Sbjct 8372 TCGTGGGAACTCAGAGAATACTTTGTCATCACAGAGTACCTGATCAAAGAATATTATGTA 8431 Query 3789 CCCTTGTTTGAAGGACTCACCATGGCAGATGATCTAAAATCTGTAA-CACGAAAGATACT 3847 || | || |||| | || ||||| || | | | | || | || ||| ||| | Sbjct 8432 CCACTTTTCAAAGGCTTAACAATGGCGGACAACATGACCACCGTGATCAAGAA-GATGAT 8490 Query 3848 GGAGTGTACCACTGGTCACGGTCAGATCGGTTACAAGGTAGTCAGCTTTGCTAATCACTT 3907 || | || || || || | | ||| | || |||| || ||| | Sbjct 8491 AGATAGCTCCCTGGGACAGGGATTAACTGACTACTCCCAAATCGCAATTGCCAACCACAT 8550 Query 3908 AGACTATGAGAAATGGAACAATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGT 3967 || ||||| |||||||||||||| || || | | ||||| ||| || |||| || Sbjct 8551 CGATTATGAAAAATGGAACAATCACCAAAGATATGACTCAACAGCCCCTGTATTCACTGT 8610 Query 3968 TATGGGTCAGTTCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACA 4027 ||||| | || |||| | ||| || || ||| || ||| | || || | | Sbjct 8611 GATGGGGAAATTTTTTGGATTACCAGCACTTTTTTCTCGTACACATCAGTTTTTTAAGGA 8670 Query 4028 GAGTTTTGTTTATTATGGTGAACGTCCTGATCTTATGACTGTTCAAGGAGGAAAGATCGT 4087 ||||| |||||||| |||| | || || | |||| | | ||| |||| || | Sbjct 8671 AAGTTTAGTTTATTACAATGAAAGACCCGACTTAATGATCAGTGATGGA-GAAACAT--T 8727 Query 4088 GAACAATACAGAA-CATATT--GTATGTTGGAACGGTCAACTGGGCGGACTTGAAGGACT 4144 || | ||| ||||| || |||||||| || || || || || || |||||||| Sbjct 8728 ATACTCGAAGGAAGGATATTGGGTCTGTTGGAATGGACAGCTAGGAGGGCTCGAAGGACT 8787 Query 4145 ACGACAAAAGGGATGGAGCGTCCTCAATCTTCTCGTCATCCTACGAGAGTCGAAGATCCG 4204 |||| | || ||||| | | || || || || | |||| | || || || Sbjct 8788 CAGACAGTACGGGTGGAGTATATTAAACCTCCTAGTACTAGAGAGAGAATGTAAAATACG 8847 Query 4205 CAACACCCAAGT---CAGAGTGCTTGCTCAAGGTGACAACCAAGTGATTTGCACACGATA 4261 || |||| ||| || | || |||||||| |||||||| || || || || | || Sbjct 8848 TAATACCCGAGTGAACACATTG---GCTCAAGGAGACAACCAGGTTATATGTACTCACTA 8904 Query 4262 CAAGATCCCA 4271 || |||||| Sbjct 8905 TAAAATCCCA 8914 >seq283 Length=322283 Score = 80.6 bits (88), Expect = 1e-11 Identities = 202/300 (67%), Gaps = 9/300 (3%) Strand=Plus/Plus Query 3739 TGAGAGAGTATTTTGTATCCACTGAGTACCTCATTAAGATGTATTATGTTCCCTTGTTTG 3798 |||| || ||||| ||| || ||||| |||||||||||| | |||||| ||| || Sbjct 272018 TGAGGGAATATTTCGTAATTACCGAGTATCTCATTAAGATGGAGTATGTT-CCTCTCTTC 272076 Query 3799 AAGGACTCACCATGGCAGATGATCTAAAATC---TGTAACACGAAAGATACTGGAGTGTA 3855 | | | ||||| |||||| | | ||| |||| | |||| || |||| ||| Sbjct 272077 CATGTTTTGCCATGAAAGATGACATGACATCAGTTGTA--AAGAAA-ATGATGGACAGTA 272133 Query 3856 CCACTGGTCACGGTC-AGATCGGTTACAAGGTAGTCAGCTTTGCTAATCACTTAGACTAT 3914 ||| || || || | |||| |||||| || | ||||||| ||| | || || Sbjct 272134 CCATAGGACAAGGACTAGAT-AACTACAAGCATGTTGGAATTGCTAACCACATCGATTAC 272192 Query 3915 GAGAAATGGAACAATCATCAGAGGAAAAAGTCAACCTTCCCCGTCTTCAAGGTTATGGGT 3974 || || ||||| || ||||| || | || | | || || ||||| || |||||| Sbjct 272193 GAAAATTGGAATAAACATCAAAGAATTAAAGCTAATAAACCAGTGTTCAATGTAATGGGT 272252 Query 3975 CAGTTCCTTGGGATGCCAAACCTATTCGCTCAAACTCATGATTTCTTCGAACAGAGTTTT 4034 | ||| |||| || | || || ||| || || ||||| |||||| |||| || ||| Sbjct 272253 AAATTCTTTGGATTGGCTAATCTGTTCTACCAGACCCATGAATTCTTCCAACAAAGCTTT 272312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27651851043596