Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_031305.1 Length=10833 Score E Sequences producing significant alignments: (Bits) Value seq1383 181 7e-42 seq283 107 1e-19 >seq1383 Length=104272 Score = 181 bits (200), Expect = 7e-42 Identities = 566/869 (65%), Gaps = 22/869 (3%) Strand=Plus/Plus Query 5983 TAGAGATCAGCTGGTTATCGGACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGGC- 6041 |||||| ||||||| |||||| | | || |||||| | || | || || |||| Sbjct 8296 TAGAGAAGAGCTGGTAATCGGATTAAGAGCCAAGGAAAGAGAAGTAAA-AATCTCGGGAA 8354 Query 6042 GCTTCTTCTCATTGATGTCATGGATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTA 6101 | |||||||| |||||||| ||| | ||||||| || || |||| |||||||| | Sbjct 8355 GATTCTTCTCTTTGATGTCGTGGGAACTCAGAGAATACTTTGTCATCACAGAGTACCTGA 8414 Query 6102 TCAAGCTTCACTATGTTCCCCTTTTCTCAGGCCTGACTATGGCGGATGATCTAACCACAG 6161 |||| | ||||| || |||||| |||| | || |||||||| | | ||||| | Sbjct 8415 TCAAAGAATATTATGTACCACTTTTCAAAGGCTTAACAATGGCGGACAACATGACCACCG 8474 Query 6162 TCATCACCAAATTATTGGACCGGACCCAAGGACAGGGAGGTACATCGTATGAAAATATCT 6221 | |||| || | | || | ||| ||||||||| || || | ||| Sbjct 8475 TGATCAAGAAGATGATAGATAGCTCCCTGGGACAGGGATTAACTGACTACTCCCAAATCG 8534 Query 6222 GCATCGCCAATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTG 6281 || ||||| ||||| |||||||| |||||||||||||| ||| | | || | || | Sbjct 8535 CAATTGCCAACCACATCGATTATGAAAAATGGAACAATCACCAAAGATATGACTCAACAG 8594 Query 6282 CGCCAGTGTTCAGGGTGATGGGACAATTCCTTGGATATCCAAACCTCATTGCGAGGACCC 6341 | || || |||| |||||||| |||| |||||| ||| || || | | || | Sbjct 8595 CCCCTGTATTCACTGTGATGGGGAAATTTTTTGGATTACCAGCACTTTTTTCTCGTACAC 8654 Query 6342 ATGAGTTCTTTCAACAAAGCTTAATATACTACAATGGTAGGCCCGATCTCATGAT-TGTG 6400 || |||| ||| | |||| ||| | || ||||||| || ||||| | ||||| ||| Sbjct 8655 ATCAGTTTTTTAAGGAAAGTTTAGTTTATTACAATGAAAGACCCGACTTAATGATCAGTG 8714 Query 6401 TCCAAGGATTCTCTTAAGTCCCGTGGCCA--ACATTTGGTTTGTTGGGAGGGCCAGGCAG 6458 | ||| | | | | || | | | ||| ||| |||||| | || ||| || Sbjct 8715 ---ATGGAGAAACATTATACTCGAAGGAAGGATATTGGGTCTGTTGGAATGGACAGCTAG 8771 Query 6459 GCGGACTGGAAGGTTTGCGACAAAAAGGATGGAGTGTCCTTAGCCTATTGGTTATTCAGA 6518 | || || ||||| | |||| | || |||||| | | | ||| | || | ||| Sbjct 8772 GAGGGCTCGAAGGACTCAGACAGTACGGGTGGAGTATATTAAACCTCCTAGTACTAGAGA 8831 Query 6519 GGGAGTCCAAAATAAGAAATACCAAGGTCAAGACGCTGGCGCAAGGTGACAACCAAGTCA 6578 | || | |||||| | |||||| || || || |||| ||||| |||||||| || | Sbjct 8832 GAGAATGTAAAATACGTAATACCCGAGTGAACACATTGGCTCAAGGAGACAACCAGGTTA 8891 Query 6579 TTTGTACTCAGTACAAGCTGAGGCCCTCTGGATGCGCCGGAGACCTTTTACAAAA----- 6633 | |||||||| || || | || | || | | ||| | |||| Sbjct 8892 TATGTACTCACTATAAAATCCCAACCGTTAGAACACCTGAAGA------AAAAAAGCCCC 8945 Query 6634 -CAT-CAATGATGTAGTCAAAAATAACAATATCATCATGTCGGCAGTCAAGGCAGGAACC 6691 ||| ||| || | || | || | ||| ||||||| ||||| | ||||| Sbjct 8946 TCATACAAGGAGCGATTC-AGAACACAAATGCCATCATGAATGCAGTAGTCGATGGAACA 9004 Query 6692 AAGAAACTCGGCCTTATAATTAATGAAGATGAGACAATGCAGTCAGCAGATTATTTGAAT 6751 ||||| | || | || || ||| || ||| || || || |||||||||||| ||||| Sbjct 9005 AAGAAGTTAGGATTAATCATCAATAAACGTGAAACCATACAATCAGCAGATTATATGAAT 9064 Query 6752 TACGGAAAGATCCCCGTGTTCAGAGGGAAAATCCTAAATTTGTTCACAAAGCGTTTGTCC 6811 || || || | || | ||| ||| || ||| | ||| | || || ||| |||| Sbjct 9065 TATGGCAAAGTACCGATCTTCCAAGGAAATATCTTGCCGTTGATTACTAAACGTGTGTCA 9124 Query 6812 CGTGTGCTATGTACGACCAATGATCAGAT 6840 | || ||| ||||||||||||||| Sbjct 9125 AGAATGACCTGTGTGACCAATGATCAGAT 9153 Score = 91.5 bits (100), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 6639 ATGATGTAGTCAAAAATAA---CAATATCATCATGTCGGCAGTCAAGGCAGGAACCAAGA 6695 ||| ||||||||| || || || ||||| | ||| ||| | |||||| |||| Sbjct 29168 ATGGTGTAGTCAAGAACAATGGCACAATCATGAATGCGGTAGTAGA---AGGAACAAAGA 29224 Query 6696 AACTCGGCCTTATAATTAATGAAGATGAGACAATGCAGTCAGCAGATTATTTGAATTACG 6755 |||| || || ||||| ||||| |||||| || || ||||||||||| |||| || | Sbjct 29225 AACTTGGTCTAATAATCAATGAGAGTGAGACGATCCAATCAGCAGATTACATGAACTATG 29284 Query 6756 GAAAGATCCCCGTGTTCAGAGGGAAAATCCTAAATTTGTTCACAAAGCGTTTGTCCCG-- 6813 | || | ||| | || ||||| || ||||| || |||| ||| | |||| | Sbjct 29285 GGAAAGTTCCCTTATTTAGAGGAAACATCCTCCCATTAGTCACCAAGAGAGTGTCTAGAA 29344 Query 6814 TGTGCTATGTACGACCAATGATCAGATTCCCACCCTTGCGAATGT 6858 || || |||| || |||||||| || || || |||| ||||| Sbjct 29345 TGACCTGTGTA--ACAAATGATCAAATCCCATCCTTTGCAAATGT 29387 Score = 86.0 bits (94), Expect = 4e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 6224 ATCGCCAATCACATTGATTATGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTGCG 6283 |||||||| ||||| ||||||||||||||||| || |||||| | | ||| |||||| | Sbjct 7413 ATCGCCAACCACATAGATTATGAGAAATGGAATAACCATCAAAGATACGAGTCCACTGAG 7354 Query 6284 CCAGTGTTCAGGGTGATGGG 6303 ||||| |||| |||||||| Sbjct 7353 CCAGTATTCACTGTGATGGG 7334 >seq283 Length=322283 Score = 107 bits (118), Expect = 1e-19 Identities = 251/369 (68%), Gaps = 10/369 (3%) Strand=Plus/Plus Query 6003 GACTGAAAGGGAAGGAACGGGAGTTGAAGAAAAACGGGCGCTT-CTTCTCATTGATGTCA 6061 || |||||||||| ||| | || | | |||| || | || || |||||| ||| || Sbjct 271955 GATTGAAAGGGAAAGAAAGAGAAATCA-GAAAGACAGACGATTTCTTCTCTTTG---TCT 272010 Query 6062 TGGATGTTGCGAGAATATTTCGTGGTCACTGAGTACCTTATCAAGCTTCACTATGTTCCC 6121 |||| ||| | ||||||||||| | || ||||| || || ||| | | |||||||| Sbjct 272011 TGGACCTTGAGGGAATATTTCGTAATTACCGAGTATCTCATTAAGATGGAGTATGTTCCT 272070 Query 6122 CTTTTCTCAGGCCTGACTATGGCGGATGATCTAACCACAGTCATCACCAAATTATTGGAC 6181 || ||| || | | | ||| ||||| | || |||| | | ||| | ||||| Sbjct 272071 CTCTTC-CATGTTTTGCCATGAAAGATGACATGACATCAGTTGTAAAGAAAATGATGGAC 272129 Query 6182 CGGACCCAAGGACAGGGAGGTACAT-CGTATGAAAATATCTGCATCGCCAATCACATTGA 6240 | ||| |||||| ||| || || || | || | | || || || ||||| || Sbjct 272130 AGTACCATAGGACAAGGA-CTAGATAACTACAAGCATGTTGGAATTGCTAACCACATCGA 272188 Query 6241 TTATGAGAAATGGAACAATCATCAACGTCAGGAGGCCACTGCGCCAGTGTTCAGGGTGAT 6300 ||| || || ||||| || |||||| | | || | | |||||||||| || || Sbjct 272189 TTACGAAAATTGGAATAAACATCAAAGAATTAAAGCTAATAAACCAGTGTTCAATGTAAT 272248 Query 6301 GGGACAATTCCTTGGATATCCAAACCTCAT-TGCGAGGACCCATGAGTTCTTTCAACAAA 6359 ||| ||||| |||||| | || || | | | | ||||||||| ||||| ||||||| Sbjct 272249 GGGTAAATTCTTTGGATTGGCTAATCTGTTCTACCA-GACCCATGAATTCTTCCAACAAA 272307 Query 6360 GCTTAATAT 6368 |||| |||| Sbjct 272308 GCTTTATAT 272316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34527239009796