Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_002548.1 Length=9491 Score E Sequences producing significant alignments: (Bits) Value seq107420 78.8 6e-11 >seq107420 Length=897 Score = 78.8 bits (86), Expect = 6e-11 Identities = 189/285 (66%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 5285 ATGTGGGTGGATACATTAAAGGATGAGAGAAGACCAATTGAAAAAGTAGATCAACTGAAA 5344 || ||| | || || || || |||||| | | ||||| | ||| ||| || ||| Sbjct 882 ATATGGATTGACACGTTGAAAGATGAGCGCCGTCCAATAGCAAAGGTAAATGCTGGGAAG 823 Query 5345 ACACGTGTGTTTTCTAATGGGCCTATGGACTTTTCTATCACTTTTAGAATGTACTATTTG 5404 |||||||||||| || ||||| ||| | | || ||| |||||| | || | ||| Sbjct 822 ACACGTGTGTTTGCTGCGGGGCCCATGATATATACTCTCATTTTTAGGAAATATTTCTTG 763 Query 5405 GGCTTCATAGCACACCT---TATGGAAAATCGAATAACCAATGAAGTATCCATAGGAACT 5461 || || ||| ||| | || | ||||| || | |||||| || || || || Sbjct 762 GGTTTTTCAGCGCACGTAGCTAGG---AATCGTATCAATAATGAAATAAGTATTGGTACG 706 Query 5462 AATGTTTATTCCCAAGATTGGAATAAGACAGTTAGAAAACTTAAAACTATGGGACCCAAG 5521 ||||||||| | ||||||| | ||| | | | ||||| | | | |||| || Sbjct 705 AATGTTTATAGCTTGGATTGGACAAGGACGGCTGAACGACTTAGATCAAAGGGAGATAAA 646 Query 5522 GTTATTGCAGGAGATTTCTCAACCTTTGATGGATCTTTGAATGTT 5566 ||| | || ||||||||| ||| | ||||||| | ||| |||| Sbjct 645 GTTGTGGCTGGAGATTTCACAAATTATGATGGAACGTTGGCTGTT 601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30169874329360