Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq45717 89.7 3e-15 seq28263 89.7 3e-15 seq23630 89.7 3e-15 seq45674 77.0 2e-11 >seq45717 Length=6850 Score = 89.7 bits (98), Expect = 3e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| | |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| Sbjct 3616 CTGCTCGGGCATAGTTCACCATCTTTCGGGTCCCAACGCGTGCGCTCTTGCTCGACCTCA 3557 Query 897 CCGACGC 903 ||||||| Sbjct 3556 CCGACGC 3550 >seq28263 Length=100138 Score = 89.7 bits (98), Expect = 3e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| | |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| Sbjct 45305 CTGCTCGGGCATAGTTCACCATCTTTCGGGTCCCAACGCGTGCGCTCTTGCTCGACCTCA 45246 Query 897 CCGACGC 903 ||||||| Sbjct 45245 CCGACGC 45239 >seq23630 Length=932 Score = 89.7 bits (98), Expect = 3e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| | |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| Sbjct 69 CTGCTCGGGCATAGTTCACCATCTTTCGGGTCCCAACGCGTGCGCTCTTGCTCGACCTCA 128 Query 897 CCGACGC 903 ||||||| Sbjct 129 CCGACGC 135 >seq45674 Length=172867 Score = 77.0 bits (84), Expect = 2e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| | |||||||||||||||||||||||| | ||| | |||| || ||||| ||||| Sbjct 80765 CTGCTCGGGCATAGTTCACCATCTTTCGGGTTCCAACACGTGCGATCTTGCTCGACCTCA 80824 Query 897 CCGACGC 903 ||||||| Sbjct 80825 CCGACGC 80831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859203351760