Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpa_20thompsoni_20[genbank_20GCA_5F001749815.1_202016-09-29] 478,281 sequences; 318,747,957 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq153517 423 1e-114 seq308158 104 2e-18 >seq153517 Length=557 Score = 423 bits (468), Expect = 1e-114 Identities = 428/557 (77%), Gaps = 0/557 (0%) Strand=Plus/Minus Query 589 ATCTGATCAAAGCCAGAACCAACGGAAAGGAGAAATGCCCCAGTTACGCCAGGTTTTCAG 648 |||||||||| ||||| || || ||| |||| | |||||| ||||||||||| || || | Sbjct 557 ATCTGATCAAGGCCAGGACAAATGGACAGGAAAGATGCCCGAGTTACGCCAGATTCTCTG 498 Query 649 GCTGGACAAGAGATAGGGACTTCATGAAGCTTGTGGCGGGGATAGACATGTTCTACCATC 708 | ||||| || || || | ||||||||| | ||||| || ||||||||||| || | | Sbjct 497 GGTGGACCAGGGACAGAAATTTCATGAAGATGGTGGCAGGTATAGACATGTTTTATTACC 438 Query 709 ACTTTCCTAAGTCTGAGTGGGCACAAATCAGATTTGGAACCATTACCAGCAGGTACAAGG 768 |||| || ||||| |||||||| || ||||| ||||| || || || || | ||||||| Sbjct 437 ACTTCCCCAAGTCAGAGTGGGCCCAGATCAGGTTTGGCACGATCACTAGTCGTTACAAGG 378 Query 769 ATTGTGCCATCATCTCATCTCTTGAGCACCTCCGTAAGACCACTGCCCTGTCTCCTAAGC 828 | |||||||| ||||| || | ||||| ||| | || ||||| || || || || Sbjct 377 ACTGTGCCATTATCTCCTCCTTGGAGCATCTCAGGAAAACCACCGCTTTGAGCCCAGGGC 318 Query 829 AGCTGCAAGGGTGGATATTGACCGATGCGGCTGCTGATGAGTACGAGCAAGTGATGAAGC 888 | | || || |||||||| || ||||| || |||||||| || ||||| || |||||| Sbjct 317 AAATTCAGGGCTGGATATTAACTGATGCAGCGGCTGATGAATATGAGCAGGTTATGAAGA 258 Query 889 CAGACGAGGAGATCGAGAAAGGGGACTCATACACACCTTACCTGTCAGACATGTGTCTGT 948 ||| ||||||||||| | || || || ||||| |||||| | || ||||||||||||| Sbjct 257 AAGATGAGGAGATCGAAATGGGTGATTCTTACACCCCTTACTTATCCGACATGTGTCTGT 198 Query 949 CTGCTCGATCCCCCTACTCTGCCACAGCATGTGCGGCTCTCCATCTGTGGGTCCACATGA 1008 |||| | || || || || || || || || | ||||||||||||||| ||||||||| Sbjct 197 CTGCCAGGTCTCCTTATTCCGCGACCGCTTGCTCTGCTCTCCATCTGTGGATCCACATGA 138 Query 1009 CTTGCATTTACCTCAGCTCTGAGAGGTCCAAGAATGCCAGGATTCCCCTTGAGACTGCCA 1068 | ||| ||||| | |||||||| ||||| || ||| |||| || || | ||| || | Sbjct 137 CCTGCGTTTACTTAAGCTCTGACAGGTCAAAAAATTCCAGAATCCCTCAGGAGGTCGCAA 78 Query 1069 TGGTCACAATCCAGACCAATGCAGCCTTGATGGGCTATGCCCTGAAGAGCAGAGCTGTAC 1128 |||| || || ||||| |||||||| |||||||| || || |||||| ||||||||||| Sbjct 77 TGGTGACTATTCAGACAAATGCAGCTTTGATGGGATACGCATTGAAGAACAGAGCTGTAC 18 Query 1129 TGGTGCAAGCTTTTGTG 1145 || ||||| |||||| Sbjct 17 TGACACAAGCCTTTGTG 1 >seq308158 Length=308 Score = 104 bits (114), Expect = 2e-18 Identities = 218/326 (67%), Gaps = 18/326 (6%) Strand=Plus/Minus Query 309 GTCAAGGCGTATGTGGCCAGTGTGATGATGAAACAGAAGGAGCAGGCGGATACCAAGTGG 368 |||||||| || | || |||||| ||||||||| ||| |||| || |||| ||| Sbjct 308 GTCAAGGCTTACATCGCTTCCGTGATGGCGAAACAGAAAGAGAAGGCAGAATCCAAATGG 249 Query 369 GAGTCCTTCGGTTTGGTCATCGCGGATGCGGGGGTCGAGATTACTATCGCAAACTTGTTT 428 ||||| ||||| || | ||||| | || || ||| | | | | | ||||| Sbjct 248 GAGTCATTCGGGTTAGAGATCGCCGCAGCTGGAACGGAGGTCAATTTTTTTAGTCTGTTT 189 Query 429 GAAGTCACAACCCTCAAATGGAAAGACGCTCCGGTGGCCACCGAGACTGCTACAGCTGAG 488 ||||| | | || | ||||||||||| || |||| ||| ||| || | | ||| Sbjct 188 GAAGTGATCTCGGTCCAGTGGAAAGACGCCCCTGTGGTCACGGAGGAAGCCTCTGAAGAG 129 Query 489 GATGACATCTGGATGGTCTTGACATTACTCGGTCTAGCCAGAATATCGGAGAACACCCAG 548 ||||| ||||| |||| || || ||||||| || || ||||| || ||| Sbjct 128 GATGATCCATGGAT---CTTG------CTGGGATTAGCCAGGATCTCCGAGAATACTCAG 78 Query 549 TACGATGCCTACGCCGACAAATTGGCTGCCAACTTGGGGAATCTGATCAAAGCCAGAACC 608 ||| || || || ||||| |||| ||||| ||||||||| | ||| || Sbjct 77 TACACTGAATATGCGGACAAGCTGGCGGCCAA---------TCTGATCAAGGTCAGGACA 27 Query 609 AACGGAAAGGAGAAATGCCCCAGTTA 634 || ||| |||| | |||||| ||||| Sbjct 26 AATGGACAGGAAAGATGCCCGAGTTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36461949263104