Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_030922.1 Length=6673 Score E Sequences producing significant alignments: (Bits) Value seq1 210 9e-51 >seq1 Length=7344524 Score = 210 bits (232), Expect = 9e-51 Identities = 316/448 (71%), Gaps = 1/448 (0%) Strand=Plus/Minus Query 4901 CTTCTACAAGGTGGACATCACCCTGACCTTGGATTGAGTTTCTACACCAACCTTTTCAAA 4960 || ||||||||||| || ||||| ||||| || | | |||| || ||||| ||| Sbjct 5403944 CTGCTACAAGGTGGCCACCACCCAGACCTGGGCCTCGACTACTACGTGAAGCTTTTTAAA 5403885 Query 4961 CAACTAAAGGAACTTTACCCAACCCTTAGGCTTCTCTCCTTAGGGCCACCAGAAATTGCG 5020 |||| |||| || ||||| | |||| ||| | | || | ||||| || |||||||| Sbjct 5403884 GAACTGAAGGGCCTCTACCCCAATCTTAAGCTGCACGCCCTCGGGCCTCCTGAAATTGCA 5403825 Query 5021 CACGTAGCAAAACTGGAAGGCATGAGCCACCTTGAAGTCTGGACGGCCATTCAAGAAGCT 5080 ||| | || ||||| ||| ||| |||| || || | |||| | ||||| ||| Sbjct 5403824 CACATTGCCAAACTCGAAAAAGCGAGTCACCACGAGGTGCTTAAGGCCCTGCAAGATGCT 5403765 Query 5081 GGATTGGATTCCCTGCCGGGGGCTGGTGCAGAAATATTGAACGACCGTGTCCGTATATTG 5140 ||| ||||| | |||| || || |||||||| || |||| |||||| || || | || Sbjct 5403764 GGACTGGATAGCTTGCCCGGTGCCGGTGCAGAGATTTTGAGCGACCGGGTTCGCCGACTG 5403705 Query 5141 ATCTCTATGGGTAAATGTGGTGGTCAAGAATGGTTGGATGTGATGCGTGCTGCCCACAAA 5200 ||||| | ||||||||||||||| |||||||| | || || ||||| || || ||| | Sbjct 5403704 ATCTCCAAAGGTAAATGTGGTGGTGAAGAATGGCTCGACGTAATGCGGGCGGCTCACCAG 5403645 Query 5201 ATCAATCTTCCAACTTCGGCAACCATGATGTTTGGACATATGGGAAACAATCGAAGAACG 5260 | | | |||| || |||||||||||||| || || | || ||||| ||||| Sbjct 5403644 CTGCGTATGACAACCAGCGCCACCATGATGTTTGGCCACATCGAAACCAATC-TGGAACG 5403586 Query 5261 TTTCGAGCACTTGGTATGGCTTCGCGAAGTACAAAGCGAAAAACCAGCCGATGCTTATGG 5320 | || ||| ||||| | | || | |||||| ||| ||||| ||||| || | || Sbjct 5403585 CATGGATCACCTGGTACGTATGCGGGCGGTACAAGCCGAGAAACCGGCCGACGCAAAGGG 5403526 Query 5321 ATTCATCGCCTTTATCCCTTGGCCTTTC 5348 ||| | || || || || ||||| ||| Sbjct 5403525 CTTCCTGGCTTTCATTCCCTGGCCATTC 5403498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21238225101776