Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_030922.1
Length=6673
Score E
Sequences producing significant alignments: (Bits) Value
seq3640 107 8e-20
>seq3640
Length=2693
Score = 107 bits (118), Expect = 8e-20
Identities = 178/256 (70%), Gaps = 1/256 (0%)
Strand=Plus/Minus
Query 5111 GAAATATTGAACGACCGTGTCCGTATATTGATCTCTATGGGTAAATGTGGTGGTCAAGAA 5170
|| ||||||| ||| | || || | |||| || | || ||||| || || ||
Sbjct 1255 GAGATATTGATTGACAGGGTGCGCAGGCTGATATCCAAAGGCAAATGCGGCTCGCAGGAG 1196
Query 5171 TGGTTGGATGTGATGCGTGCTGCCCACAAAATCAATCTTCCAACTTCGGCAACCATGATG 5230
||||||||| | |||| | || || ||| | ||| || | |||||||| |||||||||
Sbjct 1195 TGGTTGGATATTATGCACGAAGCGCATAAACTGAATATTACTACTTCGGCCACCATGATG 1136
Query 5231 TTTGGACATATGGGAAACAATCGAAGAACGTTTCGAGCACTTGGTATGGCTTCGCGAAGT 5290
||||| ||| | ||||| || ||||||||||| |||||| ||||| | | || ||
Sbjct 1135 TTTGGCCATGT-AGAAACCATTGAAGAACGTTTTGAGCACCTGGTAAAAATAAGAGAGGT 1077
Query 5291 ACAAAGCGAAAAACCAGCCGATGCTTATGGATTCATCGCCTTTATCCCTTGGCCTTTCCA 5350
||||||| || || | |||| | || || | |||||||| | ||| | |||||
Sbjct 1076 ACAAAGCCGCAAGCCCGAACATGCCAAAGGCTTTTTGGCCTTTATTGCCTGGACCTTCCA 1017
Query 5351 AGAGGATGGTGGTTTG 5366
|| | || | ||||
Sbjct 1016 GGATGTTGATACTTTG 1001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 21236181994244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |