Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_030922.1 Length=6673 Score E Sequences producing significant alignments: (Bits) Value seq3640 107 8e-20 >seq3640 Length=2693 Score = 107 bits (118), Expect = 8e-20 Identities = 178/256 (70%), Gaps = 1/256 (0%) Strand=Plus/Minus Query 5111 GAAATATTGAACGACCGTGTCCGTATATTGATCTCTATGGGTAAATGTGGTGGTCAAGAA 5170 || ||||||| ||| | || || | |||| || | || ||||| || || || Sbjct 1255 GAGATATTGATTGACAGGGTGCGCAGGCTGATATCCAAAGGCAAATGCGGCTCGCAGGAG 1196 Query 5171 TGGTTGGATGTGATGCGTGCTGCCCACAAAATCAATCTTCCAACTTCGGCAACCATGATG 5230 ||||||||| | |||| | || || ||| | ||| || | |||||||| ||||||||| Sbjct 1195 TGGTTGGATATTATGCACGAAGCGCATAAACTGAATATTACTACTTCGGCCACCATGATG 1136 Query 5231 TTTGGACATATGGGAAACAATCGAAGAACGTTTCGAGCACTTGGTATGGCTTCGCGAAGT 5290 ||||| ||| | ||||| || ||||||||||| |||||| ||||| | | || || Sbjct 1135 TTTGGCCATGT-AGAAACCATTGAAGAACGTTTTGAGCACCTGGTAAAAATAAGAGAGGT 1077 Query 5291 ACAAAGCGAAAAACCAGCCGATGCTTATGGATTCATCGCCTTTATCCCTTGGCCTTTCCA 5350 ||||||| || || | |||| | || || | |||||||| | ||| | ||||| Sbjct 1076 ACAAAGCCGCAAGCCCGAACATGCCAAAGGCTTTTTGGCCTTTATTGCCTGGACCTTCCA 1017 Query 5351 AGAGGATGGTGGTTTG 5366 || | || | |||| Sbjct 1016 GGATGTTGATACTTTG 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21236181994244