Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_033774.1 Length=8913 Score E Sequences producing significant alignments: (Bits) Value seq4130 96.9 2e-16 seq4076 78.8 5e-11 seq3869 78.8 5e-11 >seq4130 Length=17839 Score = 96.9 bits (106), Expect = 2e-16 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 8851 GTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT- 8908 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1508 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTA 1567 Query 8909 GCTCT 8913 ||||| Sbjct 1568 GCTCT 1572 >seq4076 Length=16441 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Plus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 16223 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 16282 >seq3869 Length=2169 Score = 78.8 bits (86), Expect = 5e-11 Identities = 55/60 (92%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 8856 CCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACG-ATT-GCTCT 8913 ||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||| Sbjct 219 CCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCT 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28404437188776