Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq191873 116 3e-22 >seq191873 Length=5257 Score = 116 bits (128), Expect = 3e-22 Identities = 128/165 (78%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTA-AGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| |||| || ||||| || |||||| ||| ||| | | |||||||||||| || | Sbjct 3624 AGGCGGTTCGAGATGGATCGTGAACCTGCAGAA-GCCCGGTTCTGTGCTGAGTGCAACTG 3682 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||| ||||||||| || ||| | ||||| ||||| |||||||||||||| || Sbjct 3683 TTGCCATAGTGCTGAGGAGGGGGACCTCTGGGCCGAGTCCAGCATGTTGGGCCTACGTAT 3742 Query 5125 CACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5168 ||| |||||||| ||| |||||||| || ||||||||||| |||| Sbjct 3743 CACATACTTTGC-CTGTATGGATGGCAAAGTGTATGATATTACAG 3786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116876889744